Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0241.Seq
         (534 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)      43   2e-04
SB_27851| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.063
SB_41923| Best HMM Match : Lentiviral_Tat (HMM E-Value=3.8)            31   0.59 
SB_50778| Best HMM Match : PA14 (HMM E-Value=0.00025)                  29   3.2  

>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
          Length = 482

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 173 EETIRLGGSMVHHHGIGKHRVXW-SKLEHGSAWALLEGLKKQFDPNGIMNTG 21
           +E +  GGS+ HHHG+GK R  W  K        +L+ +K+  DP  I   G
Sbjct: 428 DEILANGGSLSHHHGVGKLRKKWLPKTVSNVGMEMLKAVKRAIDPKNIFGNG 479


>SB_27851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 34.3 bits (75), Expect = 0.063
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = -2

Query: 239 VVDCKPEEEIDKYHXPLNKIICEETIRLGGSMVHHHGIGKHRVXWSKLEHG-SAWALLEG 63
           V+D   E+EI          +    + +GG+    HGIG+ ++   + E G S   +++ 
Sbjct: 281 VIDTSNEKEIQNAKD-FTLRLGRRALAVGGTCTGEHGIGRGKLALLEEEVGPSGIEVMKQ 339

Query: 62  LKKQFDPNGIMNTGYYL 12
           +K+  DP  +MN G  L
Sbjct: 340 IKQMLDPKNLMNPGKVL 356


>SB_41923| Best HMM Match : Lentiviral_Tat (HMM E-Value=3.8)
          Length = 450

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
 Frame = -2

Query: 245 YNVVDCKPEEEIDKYHXPLN-KIICEE---TIRLGGSMVHHHGIGKHRVXWSKLEHGSAW 78
           Y     +P  ++DK H  +N K+IC +   ++      +      KH+  W   ++G+ W
Sbjct: 78  YRTKGRQPLTKLDKLHLAINPKMICTKRPPSVEEDMKFIVDRSKLKHKGDWLVTDNGTFW 137

Query: 77  ALLEGLKKQFDPNGIMNTGYYLS 9
            L   LK     +G +  GY +S
Sbjct: 138 NLGNSLKVYKIKDGKVINGYMMS 160


>SB_50778| Best HMM Match : PA14 (HMM E-Value=0.00025)
          Length = 1266

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 278  SERHQHV--LVYDYNVVDCKPEEEIDKYHXPLNKII 177
            S R QHV  +VYDY   D   E E+ K   P  K+I
Sbjct: 1079 SSRDQHVSLIVYDYESEDLDIERELSKRSLPPYKLI 1114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,866,773
Number of Sequences: 59808
Number of extensions: 267700
Number of successful extensions: 716
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)