Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0226.Seq
(742 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.020
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.020
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.080
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.42
SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86) 30 2.3
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_19824| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-26) 29 5.2
SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0) 29 5.2
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5) 29 5.2
SB_32719| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_3518| Best HMM Match : Ank (HMM E-Value=0.15) 28 9.1
>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 38.3 bits (85), Expect = 0.006
Identities = 23/62 (37%), Positives = 30/62 (48%)
Frame = -2
Query: 426 TLTRPRNRNEYTLNILTRNNWRASLXXXXXXXXXXXAYTKIVAVKKLVVAFVRRAVGDAS 247
T + R ++++ R +WRASL AY K+VAVKKLVV F VG
Sbjct: 44 TCQQTTTRVHAAMHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPPQ 103
Query: 246 AV 241
V
Sbjct: 104 GV 105
>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 36.7 bits (81), Expect = 0.020
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = +1
Query: 484 PAAFLGCGTVSQAPSPESNPDSPLXVTTM 570
P + VSQAPSPESNP+SP V TM
Sbjct: 100 PIKYWDVVAVSQAPSPESNPNSPSPVVTM 128
>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 36.7 bits (81), Expect = 0.020
Identities = 18/29 (62%), Positives = 19/29 (65%)
Frame = +1
Query: 484 PAAFLGCGTVSQAPSPESNPDSPLXVTTM 570
P L VSQAPSPESNP+SP V TM
Sbjct: 44 PHMLLKGRAVSQAPSPESNPNSPSPVVTM 72
>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 34.7 bits (76), Expect = 0.080
Identities = 20/40 (50%), Positives = 22/40 (55%)
Frame = -2
Query: 375 RNNWRASLXXXXXXXXXXXAYTKIVAVKKLVVAFVRRAVG 256
R +WRASL AY K+VAVKKLVV F VG
Sbjct: 14 RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVG 53
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 32.3 bits (70), Expect = 0.42
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +2
Query: 509 PFLRLPLRNRTLIPRY 556
PFLRLPLRNRTLI R+
Sbjct: 224 PFLRLPLRNRTLILRH 239
>SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)
Length = 769
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/61 (36%), Positives = 28/61 (45%)
Frame = -3
Query: 596 LSMXVSATTMVVTCNGESGFDSGEGA*ETVPHPRKAAGAQITHSRHGEVVTKNNDTGLLR 417
+S V+A T +VT GE GE H G Q+T +HGE VT D +R
Sbjct: 336 ISSHVTAHTNLVTTRGEHVTTRGENVTTHGEHVTMR-GEQVT--KHGEYVTTRGDHVTMR 392
Query: 416 G 414
G
Sbjct: 393 G 393
>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/41 (46%), Positives = 20/41 (48%)
Frame = -2
Query: 363 RASLXXXXXXXXXXXAYTKIVAVKKLVVAFVRRAVGDASAV 241
RASL AY K+VAVKKLVV F VG V
Sbjct: 5 RASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPPQGV 45
>SB_19824| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-26)
Length = 550
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +1
Query: 352 QTCPPIVPR*NI*SVLI--PITRPRKSPVSLFFVTTSPCREWVICAPAAFLGCGTVSQAP 525
+ P IVP N + + P+T+ V VT SP +E C+P+ L T +
Sbjct: 83 ENSPTIVPVQNQQNTPLYSPLTQVENGQVYYAIVTNSPSQETQCCSPSPELAPSTPTNGN 142
Query: 526 SPESNPD 546
+ S+P+
Sbjct: 143 AQVSSPE 149
>SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
Length = 663
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 67 RNIQAAFLARFEHSNLFK--VKLSAHLDTHRRAPR*DFDIEPAFFRTPAHRRYA 222
+N + LAR+ + +F ++ AHLDT RR P D+ R RYA
Sbjct: 573 KNPEPELLARWYQTGVFTPFLRAHAHLDTKRREPWLFDDVYKNVIRDALRTRYA 626
>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
Length = 203
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +1
Query: 277 CNYELFNRNNFSIRYWSWNYRGCWH 351
C + RN +RYW W R C H
Sbjct: 91 CEVTVIARNILPVRYWIWLSRKCGH 115
>SB_32719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 169 DFDIEPAFFRTPAHRRYAPQTCQYHRGCVTDSAAHKCN 282
D D + FF P P C+ + CV A++KCN
Sbjct: 180 DDDDDDDFFSFPVIDPCLPSPCRNNGTCVNIGASYKCN 217
>SB_3518| Best HMM Match : Ank (HMM E-Value=0.15)
Length = 159
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 460 CREWVICAPAAFLGCGTVSQAPSPESNPDSPL 555
CRE + L CG AP P S+P PL
Sbjct: 15 CRENHVEVVRLLLDCGASVNAPFPNSSPGDPL 46
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,583,832
Number of Sequences: 59808
Number of extensions: 472908
Number of successful extensions: 1146
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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