Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0222.Seq
(357 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 2e-11
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 2e-09
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 2e-09
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 2e-09
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 2e-09
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 8e-09
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 1e-05
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 1e-05
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 1e-04
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 8e-04
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 8e-04
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 8e-04
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 2.6
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 27 5.9
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 64.9 bits (151), Expect = 2e-11
Identities = 31/40 (77%), Positives = 33/40 (82%)
Frame = -3
Query: 166 SWIVARRTSAKAFAKGVFINQERXLEVRRRLDTALVLTVN 47
SWI RRT+AKAFAK VFINQER LE RRR DT LVLT+N
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 58.0 bits (134), Expect = 2e-09
Identities = 28/35 (80%), Positives = 30/35 (85%)
Frame = -3
Query: 151 RRTSAKAFAKGVFINQERXLEVRRRLDTALVLTVN 47
RRT+AKAFAK VFINQER LE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 58.0 bits (134), Expect = 2e-09
Identities = 28/35 (80%), Positives = 30/35 (85%)
Frame = -3
Query: 151 RRTSAKAFAKGVFINQERXLEVRRRLDTALVLTVN 47
RRT+AKAFAK VFINQER LE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 58.0 bits (134), Expect = 2e-09
Identities = 28/35 (80%), Positives = 30/35 (85%)
Frame = -3
Query: 151 RRTSAKAFAKGVFINQERXLEVRRRLDTALVLTVN 47
RRT+AKAFAK VFINQER LE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 58.0 bits (134), Expect = 2e-09
Identities = 28/35 (80%), Positives = 30/35 (85%)
Frame = -3
Query: 151 RRTSAKAFAKGVFINQERXLEVRRRLDTALVLTVN 47
RRT+AKAFAK VFINQER LE RRR DT LVLT+N
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 45
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 56.0 bits (129), Expect = 8e-09
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = -3
Query: 148 RTSAKAFAKGVFINQERXLEVRRRLDTALVLTVN 47
RT+AKAFAK VFINQER LE RRR DT LVLT+N
Sbjct: 29 RTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 62
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 45.6 bits (103), Expect = 1e-05
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = -3
Query: 148 RTSAKAFAKGVFINQERXLEVRRRLDT 68
RT+AKAFAK VFINQER LE RRR DT
Sbjct: 2 RTTAKAFAKNVFINQERKLEDRRRSDT 28
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 45.6 bits (103), Expect = 1e-05
Identities = 23/36 (63%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Frame = -3
Query: 151 RRTS-AKAFAKGVFINQERXLEVRRRLDTALVLTVN 47
R+T+ ++ AK VFINQER LE RRR DT LVLT+N
Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRRRSDTVLVLTIN 43
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -2
Query: 173 VKFLDRRKTNXSESICQRCFHQSRTK 96
VKFLD RKTN ESI + F K
Sbjct: 2 VKFLDLRKTNYCESIAKNVFINQERK 27
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.9 bits (94), Expect = 1e-04
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = -3
Query: 151 RRTS-AKAFAKGVFINQERXLEVRRRLDTALVLTVN 47
R+T+ ++ + VFINQER LE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQDVFINQERKLEDRRRSDTVLVLTIN 43
Score = 33.5 bits (73), Expect = 0.052
Identities = 16/26 (61%), Positives = 16/26 (61%)
Frame = -2
Query: 173 VKFLDRRKTNXSESICQRCFHQSRTK 96
VKFLD RKTN ESICQ F K
Sbjct: 2 VKFLDLRKTNYCESICQDVFINQERK 27
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 39.5 bits (88), Expect = 8e-04
Identities = 20/36 (55%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Frame = -3
Query: 151 RRTS-AKAFAKGVFINQERXLEVRRRLDTALVLTVN 47
R+T+ ++ + FINQER LE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 29.5 bits (63), Expect = 0.84
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -2
Query: 170 KFLDRRKTNXSESICQRCFHQSRTK 96
+ L RKTN ESICQ CF K
Sbjct: 3 EILGFRKTNYCESICQECFINQERK 27
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 39.5 bits (88), Expect = 8e-04
Identities = 20/36 (55%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Frame = -3
Query: 151 RRTS-AKAFAKGVFINQERXLEVRRRLDTALVLTVN 47
R+T+ ++ + FINQER LE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/26 (65%), Positives = 17/26 (65%)
Frame = -2
Query: 173 VKFLDRRKTNXSESICQRCFHQSRTK 96
VKFLD RKTN ESICQ CF K
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERK 27
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 39.5 bits (88), Expect = 8e-04
Identities = 20/36 (55%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Frame = -3
Query: 151 RRTS-AKAFAKGVFINQERXLEVRRRLDTALVLTVN 47
R+T+ ++ + FINQER LE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/26 (65%), Positives = 17/26 (65%)
Frame = -2
Query: 173 VKFLDRRKTNXSESICQRCFHQSRTK 96
VKFLD RKTN ESICQ CF K
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERK 27
>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1449
Score = 27.9 bits (59), Expect = 2.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 155 DDPRISPLTSQYECXQ 202
DDPR+SP + QY C +
Sbjct: 241 DDPRVSPTSQQYACGE 256
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 24 VGGSLDDIFTVRTRAVSNRLRTSXFRS*LMKTPLANA 134
+GGS+ + T+ + RL++S FRS ++ +++A
Sbjct: 714 LGGSMGALATIPLEVIQTRLQSSAFRSQRVRVNISSA 750
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,299,943
Number of Sequences: 59808
Number of extensions: 137976
Number of successful extensions: 265
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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