Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0220.Seq
(903 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 6e-13
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 61 1e-09
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 3e-09
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 56 5e-08
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 50 3e-06
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 49 4e-06
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 48 8e-06
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 41 0.001
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.015
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.015
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.034
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 36 0.045
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 35 0.10
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 34 0.14
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 33 0.42
SB_51385| Best HMM Match : DEAD (HMM E-Value=0.00031) 32 0.55
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 32 0.55
SB_34740| Best HMM Match : DEAD (HMM E-Value=0.00031) 32 0.55
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 31 1.7
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 31 1.7
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 31 1.7
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 30 2.9
SB_51151| Best HMM Match : Vicilin_N (HMM E-Value=0.19) 29 3.9
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 29 5.1
SB_41425| Best HMM Match : DCX (HMM E-Value=8.6e-06) 29 6.8
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 28 9.0
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 72.1 bits (169), Expect = 6e-13
Identities = 31/89 (34%), Positives = 48/89 (53%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 420
P + +PFNKNFY+ HP + K+S E+++ R + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 421 YVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
+ ++ + Y +PT IQ Q PIA+SG+
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGR 555
Score = 59.7 bits (138), Expect = 3e-09
Identities = 23/41 (56%), Positives = 34/41 (82%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 626
+D++G+ KTGSGKT A++ PA+VHI +QP ++ GDGPI L+
Sbjct: 555 RDIIGIAKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLI 595
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/56 (48%), Positives = 37/56 (66%)
Frame = +1
Query: 313 RSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 480
R +EV+ YR + ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
Score = 48.8 bits (111), Expect = 6e-06
Identities = 31/77 (40%), Positives = 41/77 (53%)
Frame = +3
Query: 552 YILPAIVHINNQPPIRRGDGPIALVLGGLXES*HNKFQQVAADFGXHILCS*HVCVWWWF 731
+ILP IVHIN+QP ++ GDGPI LVL E + Q+VA G H C++
Sbjct: 113 FILPGIVHINHQPLLQPGDGPIVLVLCPTREL-AQQVQEVAYSVGKHCKLR-STCIYGGA 170
Query: 732 LKESKPGTLRRGXKIVI 782
K + L RG +I I
Sbjct: 171 PKGPQIRELERGVEICI 187
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 59.7 bits (138), Expect = 3e-09
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 432
V QPF K+FY P + K +P E +E+R + E + V G P++ + + +
Sbjct: 59 VVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKILD 118
Query: 433 GVKTMGYKEPTPIQAQGWPIAMSGKI*LAY---PKRVPAKRWPTSCQPLC 573
+K Y++PTPIQAQ P+ MSG+ +A P R A + C+ C
Sbjct: 119 VLKKNSYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELAIQIHRECKKFC 168
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 55.6 bits (128), Expect = 5e-08
Identities = 24/74 (32%), Positives = 41/74 (55%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 465
Y HPT+ + +V++ R+ E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 466 PIQAQGWPIAMSGK 507
PIQ Q P+ +SG+
Sbjct: 221 PIQMQVLPVLLSGR 234
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 49.6 bits (113), Expect = 3e-06
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGGLXES*HNKFQQVA 674
+D++G+ +TGSGKTLAY LP + + + P GD P+AL+L E F V+
Sbjct: 110 RDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTRELMQQVFMNVS 166
Score = 46.0 bits (104), Expect = 4e-05
Identities = 23/79 (29%), Positives = 39/79 (49%)
Frame = +1
Query: 271 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 450
F ++YD + V + S V+E R + + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 451 YKEPTPIQAQGWPIAMSGK 507
++ PTPIQ Q MSG+
Sbjct: 92 FQVPTPIQMQSLSCVMSGR 110
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 49.2 bits (112), Expect = 4e-06
Identities = 20/57 (35%), Positives = 34/57 (59%)
Frame = +1
Query: 337 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
+R + ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + +
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNR 139
Score = 43.2 bits (97), Expect = 3e-04
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGD----GPIALVLGGLXE 644
+D++GV +TGSGKT A+ +P +V I P I R + GP AL+L E
Sbjct: 139 RDIIGVAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRE 189
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 48.4 bits (110), Expect = 8e-06
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +1
Query: 325 EVEEYRNNHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 492
++ +R+ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Query: 493 AMSG 504
G
Sbjct: 197 MAHG 200
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = +1
Query: 352 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
EV VSG I FEEAN + V+ YK+PTP+Q PI ++G+
Sbjct: 698 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGR 749
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINN 584
+D++ +TGSGKT A++LP + + N
Sbjct: 749 RDVMACAQTGSGKTAAFLLPVMTSMMN 775
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = +1
Query: 352 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
EV VSG I FEEAN + V+ YK+PTP+Q PI ++G+
Sbjct: 121 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGR 172
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 37.5 bits (83), Expect = 0.015
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 361 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
VSG I F E F + + + GY+ PTP+Q PI M+G+
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGR 517
Score = 33.5 bits (73), Expect = 0.24
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGGLXE 644
+DL+ +TGSGKT AY+LP + + Q P+AL + E
Sbjct: 517 RDLMACAQTGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRE 563
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 37.5 bits (83), Expect = 0.015
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 438 KDNGLQRTDAHSSSRLADSYVWKDLVGVPKTGSGKTLAYILPAIVHINN-QPPIRRGDGP 614
KD G +A +DL+G KTGSGKTLA+++P + + Q R G G
Sbjct: 588 KDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPVVELLYKLQFKTRNGTGV 647
Query: 615 IAL 623
I +
Sbjct: 648 III 650
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 36.3 bits (80), Expect = 0.034
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 441 DNGLQRTDAHSSSRLADSYVW-KDLVGVPKTGSGKTLAYILPAIVHI 578
D G + S + + ++ +D++G +TGSGKTLA+ +P I HI
Sbjct: 147 DQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQHI 193
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 35.9 bits (79), Expect = 0.045
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGGLXES*HNKFQ 665
+D++G KTGSGKTLA+++P I + Q DG ALV+ E + F+
Sbjct: 88 RDVLGAAKTGSGKTLAFLIPIIETLWRQKWTSM-DGLGALVISPTRELAYQTFE 140
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 388 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
++ F + G+ G+ PT IQ QG P+A+SG+
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGR 88
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 34.7 bits (76), Expect = 0.10
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +3
Query: 438 KDNGLQRTDAHSSSRLADSYVWKDLVGVPKTGSGKTLAYILPAIVHI-NNQPPIRRGDGP 614
+D G+ +S Y +D++G +TG+GKTL++ LP + + + + +RG P
Sbjct: 89 EDRGITYLFPIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAP 148
Query: 615 IALVLGGLXE 644
LV+ E
Sbjct: 149 KVLVMAPTRE 158
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 34.3 bits (75), Expect = 0.14
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRR---GDGPIALVL 629
+D+ GV GSGK LAY+LP I I + +GP+ L+L
Sbjct: 225 RDVAGVAIEGSGKRLAYLLPIIHQITESSVYQELPLANGPLVLIL 269
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 32.7 bits (71), Expect = 0.42
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQP 590
+D +G KTGSGKT A+ LP + + + P
Sbjct: 45 RDCIGCAKTGSGKTAAFALPILQKLCDDP 73
>SB_51385| Best HMM Match : DEAD (HMM E-Value=0.00031)
Length = 127
Score = 32.3 bits (70), Expect = 0.55
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 483 LADSYVWKDLVGVPKTGSGKTLAY-ILPAIVHINNQPPIRRGDGPIALVLGGL 638
L Y+ KD++ V TG GK+L + +LPA++H G+ P+ +++ L
Sbjct: 10 LESLYLNKDVLAVLPTGYGKSLVFHLLPALLHKQRLLRNVSGNPPVVIIISPL 62
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 32.3 bits (70), Expect = 0.55
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQP 590
KD++G+ +TGSGKT A+ LP + + + P
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNP 30
>SB_34740| Best HMM Match : DEAD (HMM E-Value=0.00031)
Length = 233
Score = 32.3 bits (70), Expect = 0.55
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 483 LADSYVWKDLVGVPKTGSGKTLAY-ILPAIVHINNQPPIRRGDGPIALVLGGL 638
L Y+ KD++ V TG GK+L + +LPA++H G+ P+ +++ L
Sbjct: 116 LESLYLNKDVLAVLPTGYGKSLVFHLLPALLHKQRLLRNVSGNPPVVIIISPL 168
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 430 QGVKTMGYKEPTPIQAQGWPIAMSGK 507
+ V +G+ PTPIQA P+A+ GK
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGK 48
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 1.7
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +1
Query: 373 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 486
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 388 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
I FE+ + + + V GYK+PTP+Q PI + GK
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPI-VKGK 912
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPP 593
+DL+ +TGSGKT A+++P + I + P
Sbjct: 913 RDLMACAQTGSGKTAAFLIPILSRIYMEGP 942
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 30.7 bits (66), Expect = 1.7
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILP 563
KD+V + +TGSGKT A+++P
Sbjct: 319 KDVVAMARTGSGKTAAFLIP 338
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYPKRVPAK 543
FE+ + G+ G+ +P+PIQ + P+A++G+ LA K K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYPKRVPAK 543
FE+ + G+ G+ +P+PIQ + P+A++G+ LA K K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 283 FYDPHPTVLKRSPYEVEEYRNN--HEVTVSGVEVHNPIQYFEEANFPDY 423
+ D VL E EE NN H++ + + +HNP YFE+ + DY
Sbjct: 217 YRDEDDGVLVPIEQEAEEEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_51151| Best HMM Match : Vicilin_N (HMM E-Value=0.19)
Length = 493
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = -2
Query: 176 YCHRCQIEKNYRRICCLL----QIWNHRFHGYYSSYQT*LFF 63
+CHR Q NY C ++ Q+W+H + SS ++ +F+
Sbjct: 178 FCHRQQYRHNYYNSCLVITFFRQMWDHLWANVGSSVESSVFY 219
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +1
Query: 349 HEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 501
HEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ ++
Sbjct: 86 HEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLA 139
>SB_41425| Best HMM Match : DCX (HMM E-Value=8.6e-06)
Length = 1098
Score = 28.7 bits (61), Expect = 6.8
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1
Query: 412 FPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYPKRVPAKRWPTSCQPL 570
+P+ + K G KE P AQ W I SG L Y K +P S +PL
Sbjct: 684 YPEVSLEVKKKKGSKEVWPSDAQMWVITQSG---LIYSKAMPQLALTRSERPL 733
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 525 KTGSGKTLAYILPAIVHINNQPPIRRG 605
+TGSGKTLAY+ P +VH + R G
Sbjct: 423 QTGSGKTLAYLAP-LVHRLREDEERHG 448
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,874,607
Number of Sequences: 59808
Number of extensions: 615604
Number of successful extensions: 3453
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 3324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3451
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2597949818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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