Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0215.Seq
         (900 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43575| Best HMM Match : Sina (HMM E-Value=0)                        38   0.015
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   5.1  
SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04)                29   6.8  
SB_6416| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.8  

>SB_43575| Best HMM Match : Sina (HMM E-Value=0)
          Length = 432

 Score = 37.5 bits (83), Expect = 0.015
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 160 DLDNLLQCPVCYEIPTGHIFQCNEGHNVC 246
           DL ++ +CPVC++     I QC+ GH VC
Sbjct: 30  DLTSIFECPVCFDYVLPPILQCSSGHLVC 58


>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4277

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 824 MPRYGNCVTKTICYPGDAAN-RNQAYK 747
           +P+  NC+ K ICY  + AN RN+ +K
Sbjct: 515 LPKNDNCIIKGICYAKNEANPRNRRHK 541


>SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04)
          Length = 544

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 303 FQKIVPCIPGRQKAELSSATYIMTFIALE-NMTCRDFITYWTL 178
           FQ ++ C+ G     ++  T IMTF+ALE    CR+  T   L
Sbjct: 4   FQWMIVCVVGLMMVPVTFQTLIMTFLALEPAWKCRNGSTICNL 46


>SB_6416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 303 FQKIVPCIPGRQKAELSSATYIMTFIALE-NMTCRDFITYWTL 178
           FQ ++ C+ G     ++  T IMTF+ALE    CR+  T   L
Sbjct: 4   FQWMIVCVVGLMMVPVTFQTLIMTFLALEPAWKCRNGSTICNL 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,169,850
Number of Sequences: 59808
Number of extensions: 597434
Number of successful extensions: 1941
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1889
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)