Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0214.Seq
         (886 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43575| Best HMM Match : Sina (HMM E-Value=0)                        38   0.011
SB_20641| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.033
SB_46135| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_32104| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_30862| Best HMM Match : MAM (HMM E-Value=0.00035)                   28   8.7  

>SB_43575| Best HMM Match : Sina (HMM E-Value=0)
          Length = 432

 Score = 37.9 bits (84), Expect = 0.011
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 161 DLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRLK 259
           DL ++ +CPVC++     I QC+ GH VC   +
Sbjct: 30  DLTSIFECPVCFDYVLPPILQCSSGHLVCSNCR 62


>SB_20641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 36.3 bits (80), Expect = 0.033
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
 Frame = +1

Query: 424 DSGSDNAEYLGEDENNDNQNSVV--APNPCKDFFV---ASGCKNGNSIRLPGSSFT*PPS 588
           DS  DN+  +G ++N+DNQ   +  + +P K +++   A+G   G S RL     T P  
Sbjct: 124 DSDDDNSVSVGNNDNDDNQRICISHSSSPGKGWYIYIEATGKTQGTSARLLSPLMTGPKC 183

Query: 589 LTFILPELLEGRAEXVEYLQSMGR 660
           +TF      E  +  + Y+   GR
Sbjct: 184 MTFFSHLYGEDMSLVLVYVTVSGR 207


>SB_46135| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 645 SKHG-QISTNSWG-NLVTGNQKFSNMGIIFSXPLKY 746
           SKH  ++  + W  NLVTG ++ +N   ++  P+KY
Sbjct: 100 SKHSLEVKVSVWAENLVTGQRRLANRAALWYVPVKY 135


>SB_32104| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
 Frame = +1

Query: 394 ASDSSSTPARDSGSDNAEYLGEDENNDNQNSVV--APNPCKDFFVASGCK---NGNSIRL 558
           + D       DS  DN+  +  ++N+DNQ   +  + +P K +++ S       G   RL
Sbjct: 79  SGDGGVVFGEDSDDDNSVSVCNNDNDDNQRICISHSSSPGKGWYIYSEASLYWKGYYARL 138

Query: 559 PGSSFT*PPSLTFILPELLEGRAEXVEYLQSMGR 660
                T P  +TF      EG +  + Y+   GR
Sbjct: 139 HSPLMTGPKCMTFFSNLNGEGMSLVLVYVTVSGR 172


>SB_30862| Best HMM Match : MAM (HMM E-Value=0.00035)
          Length = 330

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = +1

Query: 424 DSGSDNAEYLGEDENNDNQNSVVAPNPC--KDFFV---ASGCKNGNSIRLPGSSFT*PPS 588
           DS  DN+  +G D+N+DNQ   ++ +    K +++   AS      S RL  +  T P  
Sbjct: 79  DSDDDNSVSVGNDDNDDNQIIRISHSSSTGKGWYIYLKASLRSKRESARLHSTLMTGPKC 138

Query: 589 LTF 597
           +TF
Sbjct: 139 MTF 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,535,597
Number of Sequences: 59808
Number of extensions: 514371
Number of successful extensions: 1682
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1623
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)