Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0212.Seq
         (526 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022)        49   2e-06
SB_5153| Best HMM Match : zf-AD (HMM E-Value=2.2)                      40   0.001
SB_10504| Best HMM Match : MBOAT (HMM E-Value=0.16)                    30   1.3  
SB_25068| Best HMM Match : PI-PLC-X (HMM E-Value=0)                    29   3.1  
SB_650| Best HMM Match : rve (HMM E-Value=0.00048)                     28   4.1  
SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07)                   27   7.2  
SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)                     27   7.2  
SB_54034| Best HMM Match : Tctex-1 (HMM E-Value=7.5)                   27   9.5  
SB_46683| Best HMM Match : F5_F8_type_C (HMM E-Value=9.6e-12)          27   9.5  
SB_11192| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022)
          Length = 90

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 25/69 (36%), Positives = 40/69 (57%)
 Frame = +2

Query: 221 P*QEGIHSSVQEAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRA 400
           P  +G+  + ++ KA  KP K + +      +RR+L  ++ +   N+YR DL    +RRA
Sbjct: 8   PSGKGVVITTRKNKAANKPGKIMNKITISRDSRRTLKTIEGVCDKNYYRMDLKDPAMRRA 67

Query: 401 SAILRSQRP 427
            AILRSQ+P
Sbjct: 68  CAILRSQKP 76


>SB_5153| Best HMM Match : zf-AD (HMM E-Value=2.2)
          Length = 132

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 21/59 (35%), Positives = 33/59 (55%)
 Frame = +2

Query: 47  RKNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQCD*PPLLQVQRLDSQESCWCRGEP 223
           R NV     D +P+  C PCE + Y+  +Q+G EQ   PP+L+     ++E C+C  +P
Sbjct: 55  RVNVTEENEDVYPELLCRPCEGSLYR--LQKGKEQ---PPILRSWTPHTEEGCFCEAKP 108


>SB_10504| Best HMM Match : MBOAT (HMM E-Value=0.16)
          Length = 465

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 318 LAPALNGRRIKFLAGFLVAFASCTLL 241
           L PA NG R +F  G+L+A +SC +L
Sbjct: 398 LVPAFNGFRWRFYIGWLLAESSCIML 423


>SB_25068| Best HMM Match : PI-PLC-X (HMM E-Value=0)
          Length = 219

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 475 KLFRLGCGCLSLFCFNGPLG 416
           +  R+GC CL L C++GP G
Sbjct: 91  RCLRMGCRCLELDCWDGPDG 110


>SB_650| Best HMM Match : rve (HMM E-Value=0.00048)
          Length = 363

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 17  VVFGVEIGLNRKNVVVTELDDH--PQQQCIPCEEAQYQKAVQ 136
           V  G+E   N +N+ +T    +  P Q  +PC +A Y+  VQ
Sbjct: 239 VTIGMEKFTNPRNIQLTSTTTYVPPNQVYVPCSQALYKPEVQ 280


>SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07)
          Length = 653

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 2   THCEHVVFGVEIGLNRKNVVVTELDDHPQQQCI 100
           +HC+H++ G E G+   N +   + D   +QC+
Sbjct: 261 SHCKHILIGAEEGIYSLN-ISDHVHDMEMEQCL 292


>SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)
          Length = 720

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 265 YQKAR*KLNPPSIQGWCQEVTV 330
           YQK    LNP S  GWC+ V V
Sbjct: 451 YQKDPCVLNPCSSHGWCEAVNV 472


>SB_54034| Best HMM Match : Tctex-1 (HMM E-Value=7.5)
          Length = 255

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 78  IIRNNNAFLVKKRNIKKPFSKEPNNVT-NLHSFRYNGLIHKKAVGVVENPDRKGFT 242
           ++ + + FL K      PF+ +  +V   LH    +G  ++ AV  VE   R+GFT
Sbjct: 9   LVSSPSDFLCKTIPFSTPFATDSVHVQITLHMDEQSGPTYEAAVNWVEQVCREGFT 64


>SB_46683| Best HMM Match : F5_F8_type_C (HMM E-Value=9.6e-12)
          Length = 495

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = +2

Query: 167 LLQVQRLDSQESCWCRGEP*QEGIHSSVQEAKATRKPAKNLIRRPFKAGARRSLYKVK 340
           +L+VQRL +QE C       ++ I   V++ +  RK  + L  +  +  + R L +++
Sbjct: 52  MLEVQRLSAQEKCHQGENLLKDRIQELVEDLEGERKTKQELSAQLIEERSLRELKQIE 109


>SB_11192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -3

Query: 194 VNQAVVPEGVEVSHIVRLLAERL--FDIALLHKECIVVADDHPV 69
           VN+ V     ++  +++L   RL   D++L++K CI  A DH V
Sbjct: 138 VNEVVKKSSKKLYFLIQLKRARLPPSDLSLIYKACIRSAVDHAV 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,494,995
Number of Sequences: 59808
Number of extensions: 316427
Number of successful extensions: 829
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)