BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ps4M0211.Seq (730 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 134 7e-32 SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 48 6e-06 SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015) 39 0.004 SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.044 SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24) 32 0.41 SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 29 2.9 SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9 SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9) 29 3.9 SB_50146| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1 SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) 28 6.7 SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 28 8.9 SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11) 28 8.9 SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10) 28 8.9 SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 28 8.9 SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9 SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20) 28 8.9 SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29) 28 8.9 SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9 SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9 SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9 SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9 >SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) Length = 322 Score = 134 bits (324), Expect = 7e-32 Identities = 77/154 (50%), Positives = 98/154 (63%), Gaps = 1/154 (0%) Frame = -3 Query: 722 EAVPGDNVSFNVKKRVRQGIASWLCCW*LPKXTHLRVLTDFTAQVIDX*PSWSNLKRLHT 543 EA+PGDNV FNVK + I K + FTAQVI + ++ Sbjct: 160 EALPGDNVGFNVKNVSVKDIKRGNVAGDF-KNNPPKPCKSFTAQVIVMNHP-GEIHAGYS 217 Query: 542 SLGLPHCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEF 366 + H H +F ++ EK+DRR+GK E NPK IK+GDAA+V ++PSKP+CVE+F EF Sbjct: 218 PVLDCHTAHIACKFDKLLEKIDRRSGKKLEDNPKMIKTGDAAMVEMIPSKPMCVETFTEF 277 Query: 365 PPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264 PPLGRFAVRDM+QTVAVGVIK+V+ EA GGK T Sbjct: 278 PPLGRFAVRDMKQTVAVGVIKSVDKTEAAGGKTT 311 Score = 73.3 bits (172), Expect = 2e-13 Identities = 32/59 (54%), Positives = 43/59 (72%) Frame = -1 Query: 685 RNVSVKELRRGYVAGDSQKXPT*GC*QILQLKSLIXNHPGQISNGYTPVLDCHTAHIAC 509 +NVSVK+++RG VAGD + P C + + ++ NHPG+I GY+PVLDCHTAHIAC Sbjct: 172 KNVSVKDIKRGNVAGDFKNNPPKPC-KSFTAQVIVMNHPGEIHAGYSPVLDCHTAHIAC 229 >SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) Length = 547 Score = 48.4 bits (110), Expect = 6e-06 Identities = 19/50 (38%), Positives = 29/50 (58%) Frame = -3 Query: 485 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 336 +D++TGK + P+ IK AI L +C+E F +F +GRF +RD Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRD 545 >SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015) Length = 80 Score = 39.1 bits (87), Expect = 0.004 Identities = 18/39 (46%), Positives = 26/39 (66%) Frame = -3 Query: 422 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 306 A V L S+P+CVE ++++ LGRF +R T+A GVI Sbjct: 40 AEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78 >SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 695 Score = 35.5 bits (78), Expect = 0.044 Identities = 14/45 (31%), Positives = 27/45 (60%) Frame = -3 Query: 527 HCPHCLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 393 HC + A+ E D ++ K+ ++ PK++ SGD ++VP++P Sbjct: 68 HCIYLFHIAKKLEVKDSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112 >SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24) Length = 726 Score = 32.3 bits (70), Expect = 0.41 Identities = 18/62 (29%), Positives = 29/62 (46%) Frame = -3 Query: 545 TSLGLPHCPHCLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEF 366 T + H Q EI R TG++TE+N ++ SG+ I +V + C+ Q + Sbjct: 242 TEINALHSGEPGQTTEINASHSRETGQTTEIN--ALHSGEPGIPGVVAAYQACIRQVQLY 299 Query: 365 PP 360 P Sbjct: 300 GP 301 >SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) Length = 903 Score = 29.5 bits (63), Expect = 2.9 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = -3 Query: 416 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 327 +++VP++P CV SF EF + +RD+ Q Sbjct: 380 MSVVPAQPQCVASFPEFCAVSVSYIRDLSQ 409 >SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 427 Score = 29.5 bits (63), Expect = 2.9 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%) Frame = +1 Query: 58 FQIYYV*PYINYKIMLHYKPCKKYRKGMSL*PFFPSK-H-LSVNEVSQL 198 +QI+Y+ Y KI +H++ K RK + L FFPS H + +SQL Sbjct: 308 YQIFYILEYTG-KISIHWRYLKITRKYLLLLAFFPSALHPICYGNISQL 355 >SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9) Length = 495 Score = 29.1 bits (62), Expect = 3.9 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +1 Query: 295 LTALMTPTATVCLMSRTAKRPRGGNSWKDSTHR 393 LT+L PT L RT +PR G W+ + H+ Sbjct: 409 LTSLNEPTGEDLLFGRTLWKPRFGYLWQSAIHQ 441 >SB_50146| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 195 Score = 28.7 bits (61), Expect = 5.1 Identities = 13/39 (33%), Positives = 18/39 (46%) Frame = +1 Query: 397 LEGTKLTMAASPDLMDFGLTSVDLPVRRSTFSLISANCR 513 L G ++ SP LMD DL + + + ANCR Sbjct: 129 LHGEEMQAQISPQLMDLHTDLADLDAKENQLDQLIANCR 167 >SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) Length = 1097 Score = 28.3 bits (60), Expect = 6.7 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = +1 Query: 310 TPTATVCLMSRTAKRPRGGNSWKDSTHRGLEG 405 TP+ VCL+SR + PR W R + G Sbjct: 282 TPSLYVCLLSRAHRDPRLSTGWSPYEKREVRG 313 >SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) Length = 904 Score = 27.9 bits (59), Expect = 8.9 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = -3 Query: 416 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 327 ++++P++P CV SF EF + +RD+ Q Sbjct: 381 MSVMPAQPQCVASFPEFCAVSVSYIRDLLQ 410 >SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11) Length = 1175 Score = 27.9 bits (59), Expect = 8.9 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -3 Query: 416 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 327 +++ P++P CV SF EF + +RD+ Q Sbjct: 385 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 414 >SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10) Length = 549 Score = 27.9 bits (59), Expect = 8.9 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -3 Query: 416 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 327 +++ P++P CV SF EF + +RD+ Q Sbjct: 389 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 418 >SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) Length = 1131 Score = 27.9 bits (59), Expect = 8.9 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -3 Query: 416 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 327 +++ P++P CV SF EF + +RD+ Q Sbjct: 1044 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1073 >SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 887 Score = 27.9 bits (59), Expect = 8.9 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -3 Query: 416 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 327 +++ P++P CV SF EF + +RD+ Q Sbjct: 532 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 561 >SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20) Length = 1285 Score = 27.9 bits (59), Expect = 8.9 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -3 Query: 416 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 327 +++ P++P CV SF EF + +RD+ Q Sbjct: 1111 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1140 >SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29) Length = 605 Score = 27.9 bits (59), Expect = 8.9 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -3 Query: 416 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 327 +++ P++P CV SF EF + +RD+ Q Sbjct: 184 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 213 >SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 988 Score = 27.9 bits (59), Expect = 8.9 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -3 Query: 416 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 327 +++ P++P CV SF EF + +RD+ Q Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32 >SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 270 Score = 27.9 bits (59), Expect = 8.9 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -3 Query: 416 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 327 +++ P++P CV SF EF + +RD+ Q Sbjct: 87 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 116 >SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 148 Score = 27.9 bits (59), Expect = 8.9 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -3 Query: 416 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 327 +++ P++P CV SF EF + +RD+ Q Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32 >SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 229 Score = 27.9 bits (59), Expect = 8.9 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -3 Query: 416 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 327 +++ P++P CV SF EF + +RD+ Q Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,142,512 Number of Sequences: 59808 Number of extensions: 433545 Number of successful extensions: 1203 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 1117 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1202 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1949964354 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -