Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0200.Seq
         (597 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28342| Best HMM Match : HAT (HMM E-Value=0.043)                     55   5e-08
SB_8637| Best HMM Match : 3-dmu-9_3-mt (HMM E-Value=2.3)               30   1.2  
SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09)           29   2.2  
SB_14360| Best HMM Match : TFIIS_C (HMM E-Value=0.032)                 29   2.9  
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)                  29   3.8  
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                      29   3.8  
SB_15209| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_1012| Best HMM Match : ORC6 (HMM E-Value=2.9)                       28   6.6  
SB_44437| Best HMM Match : PBP (HMM E-Value=2.5e-05)                   27   8.7  

>SB_28342| Best HMM Match : HAT (HMM E-Value=0.043)
          Length = 758

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 22/35 (62%), Positives = 27/35 (77%)
 Frame = +2

Query: 53  NRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVKS 157
           +R VK+DPDLGDAWA+FY+FEL HG E   E + S
Sbjct: 639 DRAVKLDPDLGDAWAFFYRFELQHGTEHGTEAIVS 673


>SB_8637| Best HMM Match : 3-dmu-9_3-mt (HMM E-Value=2.3)
          Length = 341

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 104 RNTPKRPPSRDRFLPSY*TIPCICLVSSPSRTTV 3
           ++T  +P     FL SY ++ C+C + SPS +TV
Sbjct: 282 QSTRGKPLKDSHFLHSYSSVFCLCSLDSPSTSTV 315


>SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09)
          Length = 1396

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 86  DAWAYFYKFELLHGNEQQQEDVKSRCRAAEPHHGEYWCKVSKDIV 220
           DAW+Y  ++        ++ D+K+R    E   GEY C V K++V
Sbjct: 477 DAWSYCQRYHKCE-TCGKRVDMKNRKEGEEHVCGEYKCSVCKEVV 520


>SB_14360| Best HMM Match : TFIIS_C (HMM E-Value=0.032)
          Length = 299

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
 Frame = +2

Query: 20  ERKLNKCREWFNRTVKIDPDLGDAWAY-FYKFELLHGNEQQQEDVKSRCRAAEPHHGEYW 196
           ER  N  ++  NR +  DP     W   F+ + L H N+   + VKS  ++  P  G+  
Sbjct: 69  ERSANTAQDT-NRYLYCDPPAFSIWLVAFFTYYLRHDNDSPWQTVKSYYQSRSP-CGD-- 124

Query: 197 CKVSKDIVNWCFSTDQILLPSLKTCQFLLKDFKSLNTFSFMYVSM 331
               ++   W     ++   +  TC    + ++S+   S MYVS+
Sbjct: 125 -SGRRNTTEW-----ELHSGAFHTCYTCQRKWRSVKLISCMYVSV 163


>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
          Length = 687

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -2

Query: 167 PDNAT--SRPPVAVRCREVTRIYRNTPKRPPSRDRFLP 60
           PDN     RPP+ VR +E  R Y +    PP R  F P
Sbjct: 271 PDNPRLGERPPIDVRRQEPGREYYDQKPGPPGRPPFEP 308


>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -2

Query: 167 PDNAT--SRPPVAVRCREVTRIYRNTPKRPPSRDRFLP 60
           PDN     RPP+ VR +E  R Y +    PP R  F P
Sbjct: 37  PDNPRLGERPPIDVRRQEPGREYYDQKPGPPGRPPFEP 74


>SB_15209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/18 (72%), Positives = 13/18 (72%)
 Frame = +3

Query: 543 PGGL*SRPSTQKKKKKTR 596
           PGGL   PS QKKKKK R
Sbjct: 34  PGGLTHVPSQQKKKKKNR 51


>SB_1012| Best HMM Match : ORC6 (HMM E-Value=2.9)
          Length = 1108

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 44   EWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVK 154
            EW  RT  I  +  D+   FY++ L+   E ++ + K
Sbjct: 1058 EWSRRTSTISIESNDSMGVFYEYSLIDVKENEENEGK 1094


>SB_44437| Best HMM Match : PBP (HMM E-Value=2.5e-05)
          Length = 314

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 321 YIKLNVFKDLKSLRRNWQVFSDGSSI*SVLKH 226
           Y KL++  DL+ + + W V  +GS I S+ KH
Sbjct: 49  YAKLSI--DLEGVHKEWTVNQNGSHIRSLAKH 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,830,986
Number of Sequences: 59808
Number of extensions: 376444
Number of successful extensions: 963
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)