Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0104.Seq
         (961 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54569| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0018)          29   4.2  
SB_17727| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)         29   4.2  
SB_23474| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)         29   4.2  
SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)                   29   5.6  
SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)              28   9.8  

>SB_54569| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0018)
          Length = 292

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 21/55 (38%), Positives = 24/55 (43%)
 Frame = +3

Query: 3   NL*VMGPSSTYFLINGSNMYAKLSYTSPSADRHCRSISLITLFGYYGYIFFTTDS 167
           +L +  PSS YF IN  N   K S   P    HC S SL   F     I +  DS
Sbjct: 60  DLMLSSPSSEYFSINKLNKLIKKSNEGPFI-LHCNSRSLSKNFDLLEDILYLIDS 113


>SB_17727| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)
          Length = 648

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 21/55 (38%), Positives = 24/55 (43%)
 Frame = +3

Query: 3   NL*VMGPSSTYFLINGSNMYAKLSYTSPSADRHCRSISLITLFGYYGYIFFTTDS 167
           +L +  PSS YF IN  N   K S   P    HC S SL   F     I +  DS
Sbjct: 60  DLMLSSPSSEYFSINKLNKLIKKSNEGPFI-LHCNSRSLSKNFDLLEDILYLIDS 113


>SB_23474| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)
          Length = 623

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 21/55 (38%), Positives = 24/55 (43%)
 Frame = +3

Query: 3   NL*VMGPSSTYFLINGSNMYAKLSYTSPSADRHCRSISLITLFGYYGYIFFTTDS 167
           +L +  PSS YF IN  N   K S   P    HC S SL   F     I +  DS
Sbjct: 262 DLMLSSPSSEYFSINKLNKLIKKSNEGPFI-LHCNSRSLSKNFDLLEDILYLIDS 315


>SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)
          Length = 509

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
 Frame = +1

Query: 559 SEISHPTGTLTGSSRTDYXR---EHKW-LI*VQQLHSRXGTSGPIESHHSHTTXXMPRRR 726
           S   H T T+T  S+  +     +H+   +  Q  H     + P  S H H+T  +  R 
Sbjct: 337 SSHGHSTNTITSRSQHQHDHVTAQHQHDHVTDQHQHDHVTVTAPTRSRHGHSTNTITSRS 396

Query: 727 DXQAGHLT 750
             Q  H+T
Sbjct: 397 QHQHNHVT 404



 Score = 28.3 bits (60), Expect = 9.8
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 643 QQLHSRXGTSGPIESHHSHTTXXMPRRRDXQAGHLT 750
           Q  H     + P +S H H+T  +  R   Q  H+T
Sbjct: 425 QHQHDHVTVTAPAQSRHGHSTNTITSRSQQQHNHVT 460


>SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)
          Length = 2489

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -3

Query: 500  YCSCDAIIKRVWASLDKLPNETSFSGYWKSLV 405
            YC C       W   D+  N +S   YWK L+
Sbjct: 2252 YCKCLLWSTEFWGVEDRAVNVSSLKAYWKRLL 2283


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,247,190
Number of Sequences: 59808
Number of extensions: 512130
Number of successful extensions: 926
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2824376637
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)