Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0103.Seq
         (960 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42854| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   9e-07
SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)                   31   1.4  
SB_29054| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.2  
SB_59375| Best HMM Match : TPR_2 (HMM E-Value=7.3e-06)                 30   3.2  
SB_3001| Best HMM Match : MEA1 (HMM E-Value=9.9)                       30   3.2  
SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38)             28   9.8  

>SB_42854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 51.6 bits (118), Expect = 9e-07
 Identities = 22/38 (57%), Positives = 27/38 (71%)
 Frame = +1

Query: 94  NPRSPXPPQMFNDEEYCGDYDQFDLANEVDTLEQFLKL 207
           N  +  PPQ+FN E+YCG YD+   ANE  TLE+FLKL
Sbjct: 58  NDETALPPQIFNGEQYCGGYDELFNANEDGTLEEFLKL 95


>SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)
          Length = 744

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +3

Query: 348 IETS-EKVKETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAKQGSPEKEASPIYKIW 524
           I TS EK K+ +P  +N            +     ++E+  DV++Q    K+ +  ++ W
Sbjct: 402 ISTSKEKYKQENPASQNETPAQLPAESQESA----NSEIFIDVSEQAYRRKKTAQTFEHW 457

Query: 525 LEMKQKKN 548
           LEMK+ +N
Sbjct: 458 LEMKRNQN 465



 Score = 28.7 bits (61), Expect = 7.4
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 492 EKEASPIYKIWLEMKQKKNLQ*KRLTMSQKRYQKKVLQKKRDQ 620
           EK++S +Y IWL  K  + +Q       +K+YQ+ V + KR +
Sbjct: 676 EKDSSLVYSIWLTSKYVQEMQ-----EEEKKYQEMVEKWKRKE 713


>SB_29054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 515

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
 Frame = +3

Query: 447 VDNEVQEDVAK---QGSPEKEASPIYKIWLEMKQKKNLQ*KRLTMSQKRYQKKVLQKKRD 617
           VD+E  E +AK   +   ++EA    K   +MK+K+ +   R++M ++  +K   + KRD
Sbjct: 298 VDDE-DERIAKALAEREAKREAEERAKFEADMKEKRGIHEHRISMMRESERKAAEEAKRD 356

Query: 618 Q 620
           Q
Sbjct: 357 Q 357


>SB_59375| Best HMM Match : TPR_2 (HMM E-Value=7.3e-06)
          Length = 383

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 641 SSREQSEGKDVEVTEAIDKTID-NPSDLLIESE 736
           S+  + EG D E TEA+D  I+  P  LL++ E
Sbjct: 348 STASEGEGSDGEYTEALDAAINQKPGSLLVQKE 380


>SB_3001| Best HMM Match : MEA1 (HMM E-Value=9.9)
          Length = 204

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -1

Query: 789 IGAEKQGCDSPYSADAAGSLSISRSEGLSMVLSIASVTSTSFPSDCSR-ELTVPFSFTG 616
           + A K  CD   +A    + ++   E +   +S  S+    FPS C R +L   F ++G
Sbjct: 136 VAAAKDDCDFSVAASEL-TAAVHEKEDMQEAVSFNSIKKQQFPSSCKRVQLIAIFLYSG 193


>SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38)
          Length = 1851

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
 Frame = +3

Query: 492 EKEASPIYKIWLEMKQKKNLQ*KRLTMSQ-KRYQKKVLQKKRD 617
           E+E + +Y   + ++ +  LQ KRL + Q K+Y KK+LQ+K+D
Sbjct: 708 EREKTRLYNDKILVEDE--LQTKRLEVQQCKKYIKKLLQEKKD 748


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,148,811
Number of Sequences: 59808
Number of extensions: 281559
Number of successful extensions: 768
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2824376637
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)