Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0099.Seq
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41818| Best HMM Match : Brix (HMM E-Value=0.015)                    32   0.39 
SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 30   1.6  
SB_9537| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)           29   4.8  
SB_54325| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_38362| Best HMM Match : BRCT (HMM E-Value=0)                        29   4.8  
SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_4713| Best HMM Match : WSC (HMM E-Value=1.8e-16)                    28   6.3  
SB_55239| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_41818| Best HMM Match : Brix (HMM E-Value=0.015)
          Length = 170

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +2

Query: 11  ERKRFWKLHRSRQEERDKDKSPPKEIKPPPGAVESTQIDDIEYGDPPEVE 160
           + KR  +  R R+E+   D++PPK++   P  +E+T++ D    DP + E
Sbjct: 32  KEKRERRKKRKREEQELGDEAPPKQV---PRTIENTRVQDETMVDPLDEE 78


>SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1080

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -3

Query: 106  SSRRGLDLFRWRFIFISFLLSASMQFPESFSL 11
            S++RGLDL RW   FI+  L      PES SL
Sbjct: 921  SNQRGLDLIRWTIQFIAVYLMYKGIQPESLSL 952


>SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1507

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +2

Query: 89  KPPPGAVESTQIDDIEYGDP--PEVEGPNFAELLTPV 193
           +PPP   EST I  +EY  P   + +GP++AE  +P+
Sbjct: 85  RPPPLPTESTGIPVVEYVRPDIQDEDGPDYAEPQSPL 121


>SB_9537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = +2

Query: 80  KEIK---PPPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQ--AIPSASTSKKQLPI 241
           KE+K   PPP +  +T +       PP  + P+  E + P +Q   +P A  +K++ P+
Sbjct: 171 KEVKAPPPPPRSNSATYLRAHSRNGPPVKDRPSSTEPVIPKEQKLTVPKADIAKERQPV 229


>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
          Length = 1301

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +2

Query: 47   QEERDKDKS-PPKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQAIPSASTS 223
            QE     KS PP ++ P  GA   + ++++  G PP  + P   E   P +Q +   S  
Sbjct: 1023 QERPTSFKSWPPPQLAPGGGAQPKSFLEELFNGAPPGGKEPVGPEDDKPAEQRMSFTSLL 1082

Query: 224  KKQLP 238
            K+  P
Sbjct: 1083 KEMAP 1087


>SB_54325| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +2

Query: 65  DKSPPKEIKPPPGAVESTQIDDIEYGDPPEVEGP----NFAELLTPVDQ 199
           ++SP  ++ PP   VES   D ++  DP  +  P    +F E L P ++
Sbjct: 196 NESPAVKVMPPSDTVESQSDDKMDILDPSNIPDPPKLEDFVEELNPEEK 244


>SB_38362| Best HMM Match : BRCT (HMM E-Value=0)
          Length = 1572

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +2

Query: 41   SRQEERDKDKSPPKEIKPPPGAVESTQIDDIEYGDP 148
            SR   RD DKS        P   E +Q+D I Y DP
Sbjct: 1175 SRNHMRDSDKSLSGNGHKLPDESEHSQVDTITYDDP 1210


>SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 326

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +2

Query: 14  RKRFWKLHRSRQEERDKDKSPPKEIKPPPGAVESTQI 124
           RKR  KL  ++  E  K K+PPKE +P   A E++Q+
Sbjct: 185 RKRT-KLQPAKVPEPKKRKAPPKESQPFEEAFETSQV 220


>SB_4713| Best HMM Match : WSC (HMM E-Value=1.8e-16)
          Length = 343

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 193 DRCQ*FCKIRAFHFRGITILNIINLCGLNSSRRG 92
           D C   CK + FHF  I    + + CG+N  R G
Sbjct: 229 DECIQRCKAKGFHFAAINNYTLCS-CGINYGRYG 261


>SB_55239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 26  WKLHRSRQEERDKDKSPPKEIKPPPGAVES 115
           WK    +++ R+++   P EIK  P +VES
Sbjct: 9   WKRKSKKKQNREENSIAPDEIKKRPESVES 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,666,517
Number of Sequences: 59808
Number of extensions: 319497
Number of successful extensions: 974
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)