Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0091.Seq
(845 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58699| Best HMM Match : UCR_14kD (HMM E-Value=3.6e-37) 71 9e-13
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 29 3.6
SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_36418| Best HMM Match : Ion_trans (HMM E-Value=3.5e-28) 29 6.3
SB_38133| Best HMM Match : TolA (HMM E-Value=0.38) 28 8.3
SB_44511| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_58699| Best HMM Match : UCR_14kD (HMM E-Value=3.6e-37)
Length = 116
Score = 71.3 bits (167), Expect = 9e-13
Identities = 32/65 (49%), Positives = 46/65 (70%)
Frame = -1
Query: 257 SLRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLERE 78
++RR+P + RNFRIVRAI +M+ LP+E WTK ED YL P++++V+ ER ERE
Sbjct: 52 AVRRIPEEERNLRNFRIVRAIDTTMKMKWLPEELWTKPSEDVPYLDPVIQKVKAERKERE 111
Query: 77 QWEKE 63
W+K+
Sbjct: 112 LWDKQ 116
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 53.2 bits (122), Expect = 3e-07
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = -3
Query: 597 SWIVARRTSAKAFAKGVFINQERKLEVRRR 508
SWI RRT+AKAFAK VFINQERKLE RRR
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRR 33
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 52.4 bits (120), Expect = 4e-07
Identities = 24/42 (57%), Positives = 27/42 (64%)
Frame = -2
Query: 604 VKFLDRRKTNISESICQRCFHQSRTKVRGSKALDTALVLTVN 479
VKFLD RKTN ESICQ CF K+ + DT LVLT+N
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 52.4 bits (120), Expect = 4e-07
Identities = 24/42 (57%), Positives = 27/42 (64%)
Frame = -2
Query: 604 VKFLDRRKTNISESICQRCFHQSRTKVRGSKALDTALVLTVN 479
VKFLD RKTN ESICQ CF K+ + DT LVLT+N
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 47.6 bits (108), Expect = 1e-05
Identities = 23/42 (54%), Positives = 26/42 (61%)
Frame = -2
Query: 604 VKFLDRRKTNISESICQRCFHQSRTKVRGSKALDTALVLTVN 479
VKFLD RKTN ESICQ F K+ + DT LVLT+N
Sbjct: 2 VKFLDLRKTNYCESICQDVFINQERKLEDRRRSDTVLVLTIN 43
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 46.4 bits (105), Expect = 3e-05
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = -3
Query: 582 RRTSAKAFAKGVFINQERKLEVRRR 508
RRT+AKAFAK VFINQERKLE RRR
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRR 33
Score = 31.5 bits (68), Expect = 0.89
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 604 VKFLDRRKTNISESICQRCFHQSRTKVRGSKALDTALVLTVN 479
VKFLD + +++ + F K+ + DT LVLT+N
Sbjct: 2 VKFLDYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 46.4 bits (105), Expect = 3e-05
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = -3
Query: 582 RRTSAKAFAKGVFINQERKLEVRRR 508
RRT+AKAFAK VFINQERKLE RRR
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRR 33
Score = 31.5 bits (68), Expect = 0.89
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 604 VKFLDRRKTNISESICQRCFHQSRTKVRGSKALDTALVLTVN 479
VKFLD + +++ + F K+ + DT LVLT+N
Sbjct: 2 VKFLDYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 46.4 bits (105), Expect = 3e-05
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = -3
Query: 582 RRTSAKAFAKGVFINQERKLEVRRR 508
RRT+AKAFAK VFINQERKLE RRR
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRR 33
Score = 31.5 bits (68), Expect = 0.89
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 604 VKFLDRRKTNISESICQRCFHQSRTKVRGSKALDTALVLTVN 479
VKFLD + +++ + F K+ + DT LVLT+N
Sbjct: 2 VKFLDYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 46.4 bits (105), Expect = 3e-05
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = -3
Query: 582 RRTSAKAFAKGVFINQERKLEVRRR 508
RRT+AKAFAK VFINQERKLE RRR
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRR 35
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 44.4 bits (100), Expect = 1e-04
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -3
Query: 579 RTSAKAFAKGVFINQERKLEVRRR 508
RT+AKAFAK VFINQERKLE RRR
Sbjct: 2 RTTAKAFAKNVFINQERKLEDRRR 25
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 44.4 bits (100), Expect = 1e-04
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -3
Query: 579 RTSAKAFAKGVFINQERKLEVRRR 508
RT+AKAFAK VFINQERKLE RRR
Sbjct: 29 RTTAKAFAKNVFINQERKLEDRRR 52
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/41 (48%), Positives = 24/41 (58%)
Frame = -2
Query: 601 KFLDRRKTNISESICQRCFHQSRTKVRGSKALDTALVLTVN 479
+ L RKTN ESICQ CF K+ + DT LVLT+N
Sbjct: 3 EILGFRKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 43.2 bits (97), Expect = 3e-04
Identities = 21/42 (50%), Positives = 25/42 (59%)
Frame = -2
Query: 604 VKFLDRRKTNISESICQRCFHQSRTKVRGSKALDTALVLTVN 479
VKFLD RKTN ESI + F K+ + DT LVLT+N
Sbjct: 2 VKFLDLRKTNYCESIAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 191 LSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLERE-QWEKEY 60
LS + T P + T E+D L L + Q EK+ ER+ +W + Y
Sbjct: 102 LSSEPTQQPTKPLTVQEQDDLALAQALAQSEKDEAERKRRWGESY 146
>SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2324
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 742 LLSTLIGQSKIVGPLXHSPRAPGXGFGN 825
L+S LIG+S ++ PL +P+ PG N
Sbjct: 895 LVSALIGRSNLMSPLPQTPQFPGFSGSN 922
>SB_36418| Best HMM Match : Ion_trans (HMM E-Value=3.5e-28)
Length = 466
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -1
Query: 191 LSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLERE 78
LS KT LPKE+W K E++S P V Q ++ +R+
Sbjct: 8 LSPPKT-LPKEQWAKREKNSEGFKPGVMQEKRTLFKRD 44
>SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)
Length = 2114
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = -1
Query: 197 IQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEKE 63
I+ S+QKT PK++ + E+D E+ EK++ ++E E++
Sbjct: 1868 IEKSLQKTFHPKKKENEEEDDKKEKKEENEEEEKKKKKKENEEED 1912
>SB_44511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 51
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = -1
Query: 188 SMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEKE 63
S + +L ++E K EE + LTP ++ +LE+++ EKE
Sbjct: 8 SNEHLLLNEKEPPKKEEPKIVLTPEEQEELDRKLEKQRMEKE 49
>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 665 QNSEVMINRDNWGHSY-CDVRGEILGSSQDEHQRKHLP 555
Q EV +++ GH Y C GE++ S++D H+ +P
Sbjct: 7 QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,121,434
Number of Sequences: 59808
Number of extensions: 477322
Number of successful extensions: 1126
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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