Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0089.Seq
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)                 29   3.5  
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)                 29   3.5  
SB_37544| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_2702| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_45570| Best HMM Match : Euplotes_phero (HMM E-Value=2.6)            28   8.1  

>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
          Length = 1797

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 503 LIACLKX*AXHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 637
           L+ CL   A  ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 447 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491


>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
          Length = 1304

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 503  LIACLKX*AXHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 637
            L+ CL   A  ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 866  LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910


>SB_37544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = -2

Query: 227 RSDPVGAE--PSNRSVHDSWCSMGIKCTWKCWDKSPHVQ--HYTHHPKEYLTAL 78
           R DP   E  P  RSV      MG+ C W+ + + P+ Q   Y   PK Y   L
Sbjct: 603 RMDPSKIEKNPGLRSV----AKMGLNCMWRKFGEQPNPQRTEYVDDPKAYFALL 652


>SB_2702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = -1

Query: 465 TGNGPHRGXGVGLCRGHQXDHDRRAGRRLPEEPDHAEYSAXVYGIPHEDV 316
           TGN       VG       +H    GR LPEE D A+         H+DV
Sbjct: 18  TGNRDEESDVVGEVAPSHDEHQTTEGRDLPEEIDVAQEHVAPSHDEHQDV 67


>SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
 Frame = -2

Query: 431 DSAADIXEITIGVPAAVF---PKNQIMQNTLRXYMEYHMKTFYTSATSHYIRSSQXFHXP 261
           D+      +   +P+A+     +N ++ + ++   ++    FYT+  + Y+ SS     P
Sbjct: 312 DTTNQTHSLPKSIPSAILISTAQNHVLDSPVKSLRKWVDGCFYTAPVASYMESSGVAGKP 371

Query: 260 LCSAPALFLXSRSDPVGAEPSNRS 189
           L S P     +    + + PS++S
Sbjct: 372 LPSTPKQRTSTEIPVITSAPSSQS 395


>SB_45570| Best HMM Match : Euplotes_phero (HMM E-Value=2.6)
          Length = 388

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 206 EPSNRSVHDSWCSMGIKCTW 147
           E S   VH  WC+  + CTW
Sbjct: 350 EYSEHMVHHVWCTCTVTCTW 369


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,353,688
Number of Sequences: 59808
Number of extensions: 315183
Number of successful extensions: 943
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)