Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0074.Seq
         (583 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)              84   9e-17
SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.91 
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.91 
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)            29   2.8  
SB_26695| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               29   2.8  
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_34008| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 83.8 bits (198), Expect = 9e-17
 Identities = 39/45 (86%), Positives = 41/45 (91%)
 Frame = +3

Query: 327 EASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSXR 461
           E SKKEI+DILVQYDRSLLVADPRR E KKFGGPGAR+RYQKS R
Sbjct: 63  EVSKKEIRDILVQYDRSLLVADPRRTEAKKFGGPGARSRYQKSYR 107


>SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -3

Query: 326 EWINEIPTVPIYYLAKP 276
           EWINEIPTVPI    +P
Sbjct: 11  EWINEIPTVPIIEFLQP 27


>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -1

Query: 199 TLTRPRNRNEYTLNILTRNNWRASLXXXXXXXXXXXAYTKIVAVKKL 59
           T  +   R    ++++ R +WRASL           AY K+VAVKKL
Sbjct: 44  TCQQTTTRVHAAMHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKL 90


>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
          Length = 203

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 50  CNYELFNRNNFSIRYWSWNXRGCWH 124
           C   +  RN   +RYW W  R C H
Sbjct: 91  CEVTVIARNILPVRYWIWLSRKCGH 115


>SB_26695| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 441

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -2

Query: 462 NGKISGIWHGHLDHRTSWARSDAGQPPANSYRIVL--GCL*FPSLRLRMD*RDSHCPYLL 289
           NGK SGI +G   +  S    D     +N++ I L   C  FP+     D  D + P LL
Sbjct: 219 NGKRSGITNGAHWYSVSGGMQDYNYLHSNAFEITLEVSCCKFPAASTLSDFWDKNKPALL 278

Query: 288 S 286
           S
Sbjct: 279 S 279


>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -1

Query: 148 RNNWRASLXXXXXXXXXXXAYTKIVAVKKL 59
           R +WRASL           AY K+VAVKKL
Sbjct: 14  RIHWRASLVPAAAVIPAPIAYIKVVAVKKL 43


>SB_34008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 288 SSETTSKEGSRPQITHSRHGEVV 220
           SS+   K  S+P+ITH   GE++
Sbjct: 830 SSKVKGKRNSKPKITHPNQGEIL 852


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,797,100
Number of Sequences: 59808
Number of extensions: 335964
Number of successful extensions: 704
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)