Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0139
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)               70   2e-12
SB_55031| Best HMM Match : GRP (HMM E-Value=5.3)                       29   3.5  
SB_36663| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  

>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1789

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 32/43 (74%), Positives = 37/43 (86%)
 Frame = +2

Query: 125 NNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLF 253
           N K  +KE+ELLLQ+FSR+VSTKSS LFY NA IVSAIP+WLF
Sbjct: 3   NGKKLSKEDELLLQNFSRSVSTKSSILFYANALIVSAIPLWLF 45



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 28/70 (40%), Positives = 45/70 (64%)
 Frame = +1

Query: 256 RVHSLEISTAIIWFILVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKLADDK 435
           R+H ++  ++ I F ++T  STWL+A AY+N KFQLKH             ++++L  +K
Sbjct: 47  RIHQMDPYSSGILFAVMTLVSTWLVAFAYKNVKFQLKHKIAQRRDAAITKEVNQELDPNK 106

Query: 436 KMSRKEKDER 465
           K++R+EKDER
Sbjct: 107 KLTRQEKDER 116


>SB_55031| Best HMM Match : GRP (HMM E-Value=5.3)
          Length = 487

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = +1

Query: 40  SCLATEQY---AAFICVCKS*SNLFSKNVWKEQQSFYKRRRVIVARF*PECVHKIVCSLL 210
           SCL+       AAF+C   +  NLF   + K  QS     + I+ R  P C+        
Sbjct: 70  SCLSVHHIHGLAAFLCHMSTQRNLFKPVIVKSNQSHKDTAKHILLRLHPACIRGFCLRHH 129

Query: 211 RER 219
           R+R
Sbjct: 130 RQR 132


>SB_36663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/61 (22%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = -2

Query: 249 NQIGIAETIKAFP*KRADDFVDTFRLKSCNNNSSSFVKALLF-FPDIFTK*VTLTFTNTN 73
           +++G+A ++ A   +RAD+ +++  ++     S S VK +L   P+   K ++ T ++ +
Sbjct: 9   SRLGVATSLSAETPRRADELIESANMERNKGKSRSQVKEMLLKVPEFIKKSISSTISDED 68

Query: 72  K 70
           +
Sbjct: 69  E 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,095,870
Number of Sequences: 59808
Number of extensions: 392305
Number of successful extensions: 1022
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)