Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0131
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17056| Best HMM Match : Lipase_3 (HMM E-Value=9.9e-09)              31   0.65 
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_19492| Best HMM Match : Ank (HMM E-Value=1.5e-05)                   28   6.0  
SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_57161| Best HMM Match : 7tm_1 (HMM E-Value=1e-31)                   28   8.0  

>SB_17056| Best HMM Match : Lipase_3 (HMM E-Value=9.9e-09)
          Length = 627

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 73  GSSEAILLYRIIKRNGR-DGMVSLSHYTNIPMCVNCATDEPTSSS 204
           G +   + Y+IIKR  R D  VSLS   N+P  VN AT+E  S++
Sbjct: 538 GDNIVAVQYKIIKRPDRSDFSVSLSEAVNVPNIVN-ATNEDNSTA 581


>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2190

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 603  DSWTLFRDQDSFGMKLMKTSELYRHPSHQKVGL 505
            DS+T+   QD FG ++ K S++  HPS   V L
Sbjct: 1757 DSYTVGSRQDLFGDQMFKISKIISHPSSYGVVL 1789


>SB_19492| Best HMM Match : Ank (HMM E-Value=1.5e-05)
          Length = 559

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 91  ELLPTIPRQIRGRGRHLQTKHSM*VYILMY 2
           EL  T+P+ IRG   H  TKH +  Y L +
Sbjct: 224 ELQKTLPQIIRGLDEHCVTKHGITPYYLAF 253


>SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2047

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 91   ELLPTIPRQIRGRGRHLQTKHSM*VYILMY 2
            EL  T+P+ IRG   H  TKH +  Y L +
Sbjct: 1672 ELQKTLPQIIRGLDEHCVTKHGITPYYLAF 1701


>SB_57161| Best HMM Match : 7tm_1 (HMM E-Value=1e-31)
          Length = 510

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -1

Query: 532 TPQSPKSRPGYSHAHTC 482
           TP+SP+ RP  +HAHTC
Sbjct: 9   TPESPE-RPELNHAHTC 24


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,024,232
Number of Sequences: 59808
Number of extensions: 478826
Number of successful extensions: 963
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)