Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0109
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.2  
SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)                 28   7.3  

>SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1933

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 275  LTLISQIPSKVHPSHFRTPPPHIT 346
            +  + QIP  VHPS+   PPP+ T
Sbjct: 1553 MNFLQQIPLGVHPSYPLPPPPYAT 1576


>SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)
          Length = 1227

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 610  IHLMVYTYVYYFFSIILNFTTTAYSPLPNARVH-L*ICA 497
            +HL + + +Y  FS++L+ T TAY  +  A V  L +CA
Sbjct: 902  VHLCILSQLYDAFSVLLDSTETAYLSVGCASVMCLGLCA 940


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,134,013
Number of Sequences: 59808
Number of extensions: 365367
Number of successful extensions: 833
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)