Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0099
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37120| Best HMM Match : EB (HMM E-Value=4.2)                        33   0.26 
SB_53128| Best HMM Match : CBFD_NFYB_HMF (HMM E-Value=3.1)             30   1.8  
SB_47730| Best HMM Match : Ion_trans (HMM E-Value=1e-14)               30   1.8  
SB_19886| Best HMM Match : PT (HMM E-Value=2.1)                        29   4.2  
SB_6696| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.2  
SB_2212| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.6  
SB_42698| Best HMM Match : SH3_1 (HMM E-Value=5.2e-16)                 28   5.6  
SB_23263| Best HMM Match : Herpes_UL73 (HMM E-Value=3.3)               28   5.6  
SB_11219| Best HMM Match : PADR1 (HMM E-Value=2)                       28   5.6  
SB_59015| Best HMM Match : Arif-1 (HMM E-Value=0.62)                   28   7.4  
SB_29550| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)                 27   9.8  
SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)                   27   9.8  
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  27   9.8  
SB_33248| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.12)            27   9.8  
SB_30515| Best HMM Match : Lyase_8 (HMM E-Value=1.2e-05)               27   9.8  

>SB_37120| Best HMM Match : EB (HMM E-Value=4.2)
          Length = 376

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
 Frame = +1

Query: 424 SPACTAGVMHC---YTVRRANSLTLKPSXASERSTRQSPPARPPLNA*TPGAWYPMTTPA 594
           S  C  G+      YTV++A   T KP+ A ++   + P A+ P  A  PGA    +   
Sbjct: 277 SDTCAVGLSDTAFVYTVKKATP-TKKPTPAKKKPAPKKPAAKKPAKAKKPGAVSSASKLR 335

Query: 595 --*YVTYLKARQTSPVRP 642
              +V  LK ++T P +P
Sbjct: 336 CNAFVVKLKLKRTPPGKP 353


>SB_53128| Best HMM Match : CBFD_NFYB_HMF (HMM E-Value=3.1)
          Length = 310

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 515 VRGNPRQHDRH*TRKRQGHGTQ*PLRHDM*HT*KHARHH 631
           +R   ++  RH T++   H TQ  +RH   HT +HA  H
Sbjct: 202 IRNATQRTIRHATQRTIRHATQRTIRHATQHTIRHATQH 240


>SB_47730| Best HMM Match : Ion_trans (HMM E-Value=1e-14)
          Length = 904

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -2

Query: 236 FPASVD*YQRYL--LYWVLSCVTVRGNPASPAVSFFVL*SIA 117
           +P +   YQ+YL  LYW    +T  G+  SPA +F  L +IA
Sbjct: 341 YPGNGSLYQQYLKSLYWSTLTLTAIGDLPSPATNFEYLYTIA 382


>SB_19886| Best HMM Match : PT (HMM E-Value=2.1)
          Length = 323

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 7   IXTVDLDQMSAVLNDLKTVMDQEQQHLSMGQINGQPVAMDYRTKKLTAGD 156
           + TVD D +   L DL T  D      ++GQ+ G P     R  + T GD
Sbjct: 205 VGTVDPDPLKQKLMDLVTAPDTVFNAATIGQMTGDP-TYSQRVAQPTGGD 253


>SB_6696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 104 LICPIERCCCS*SITVLRSLSTADIWSR 21
           +ICP E C    S TV++ +S  +IW +
Sbjct: 50  IICPFENCDGVLSETVIKEISDEEIWKK 77


>SB_2212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = -3

Query: 385 LLRSDRSPHIASVPDAVSTFPAPVDCAQSVLPVTSRYVXSFGVVLRFHSNFLPALTNINA 206
           L R +  P  +S  D  ST  +    A    P T + V    V +      +  L N+++
Sbjct: 8   LRRQESEP--SSSKDKCSTSKSGNSGATDSTPATVQIVLPHSVTVPTLKKMMQLLINLDS 65

Query: 205 ICCIGFF 185
           +C +GFF
Sbjct: 66  LCSVGFF 72


>SB_42698| Best HMM Match : SH3_1 (HMM E-Value=5.2e-16)
          Length = 505

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 19  DLDQMSAVLNDLKTVMDQEQQHLSMGQING 108
           D D++    ND+ T++ Q+ +H  +G++NG
Sbjct: 132 DDDELGFRKNDIITIISQKDEHCWVGELNG 161


>SB_23263| Best HMM Match : Herpes_UL73 (HMM E-Value=3.3)
          Length = 292

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = -3

Query: 385 LLRSDRSPHIASVPDAVSTFPAPVDCAQSVLPVTSRYVXSFGVVLRFHSNFLPALTNINA 206
           L R +  P  +S  D  ST  +    A    P T + V    V +      +  L N+++
Sbjct: 169 LRRQESEP--SSSKDKCSTSKSGNSGATDSTPATVQIVLPHSVTVPTLKKMMQLLINLDS 226

Query: 205 ICCIGFF 185
           +C +GFF
Sbjct: 227 LCSVGFF 233


>SB_11219| Best HMM Match : PADR1 (HMM E-Value=2)
          Length = 543

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = -3

Query: 403 FYRRDGLLRSDRSPHIASVPDAVSTFPAPVDCAQSVLPVTSRYVXSFGVVLRFHSNFLPA 224
           F  R  +L   R P   +    ++  PAP+D  Q +L ++   + + GV+ RF   F  +
Sbjct: 399 FEERCAVLSLYRQPWSEACACFLTLCPAPIDLGQKLL-ISLEDIVAVGVLERFSRTFATS 457

Query: 223 LTNINAICC 197
            T     CC
Sbjct: 458 -TESRDYCC 465


>SB_59015| Best HMM Match : Arif-1 (HMM E-Value=0.62)
          Length = 526

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 277 YVXSFGVVLRFHS-NFLPALTNINAICCIGFFPA*LFEVIQRRQ 149
           YV S   +LR H   FL  L N   IC +G     +F V+QR +
Sbjct: 430 YVFSVLTILRAHLLRFLRVLANFLVICVLGGSGYAIFWVVQRSE 473


>SB_29550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 464

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
 Frame = -3

Query: 544 AVVLAGIAAYFAHWRXWASKLKNLPA---GRCNNALRLQCRPEIIFRSKSFYRRDGLLRS 374
           AVVL+ +      W  + S++KNL A         +++    ++   +K  Y+R G LRS
Sbjct: 358 AVVLSALVYGAETWTVYRSQVKNLHAYMMRHLREIMKITWMDKV--TNKEIYKRTG-LRS 414

Query: 373 DRSPHIASVPDAVSTFPA--PVDCAQSVLPVTSR 278
                +  + D +  F A    DC  S   ++SR
Sbjct: 415 MADHSLRKISDGLGMFTAWTLTDCLGSCSTLSSR 448


>SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
          Length = 756

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 619 VLLGMLHIMP-EWSLGTMPLAFTRLMAVVLAGIAAYFAHWRXWASKL 482
           + L +L +MP  W LG   L  TRL + ++A +    + W  +  +L
Sbjct: 124 LFLCLLTVMPWTWFLGARRLGMTRLQSSLIAMLVFMLSSWASFGFEL 170


>SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)
          Length = 1456

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -3

Query: 529  GIAAYFAHWRXWASKLKN-LPAGRCNNALR 443
            G   Y+ HW+ W  K  + +PA   N  LR
Sbjct: 1240 GRGEYWVHWKGWPDKYNSWVPATEVNKVLR 1269


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
 Frame = +1

Query: 337  PHQXPTLYGANGQTSTTHRGGKKISI*RLSPACTAGVMHC--YTVRRANSLTLKPSXASE 510
            P   P+L   +   S+T R  + I +   SP+ T G +H    T RRA    +     S 
Sbjct: 822  PSPMPSLSPLSSTDSSTPRSRRTIDLPPTSPSYTPGRVHSDPETPRRAGRGRVARRPGSA 881

Query: 511  RSTRQSPPARPPLNA*TPGAWYPMTTP 591
             +  ++PP R    A +P   Y   TP
Sbjct: 882  IARLRAPPQRA---AASPLVGYAARTP 905


>SB_33248| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.12)
          Length = 312

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 54  QNGNGSRAATSLYGADQRPASCNGLQNKKAHCWR 155
           ++G   RA TS     Q       +QNKKA CW+
Sbjct: 207 EDGEEDRATTSKDTHQQTAQDNLPVQNKKAECWK 240


>SB_30515| Best HMM Match : Lyase_8 (HMM E-Value=1.2e-05)
          Length = 1364

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 546 WRSCWRGLPRTSLTGGTGL 490
           WR+ W G    SLTG TGL
Sbjct: 259 WRAVWLGYEEMSLTGLTGL 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,754,665
Number of Sequences: 59808
Number of extensions: 438138
Number of successful extensions: 1323
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)