Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0055
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15248| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-21)                 29   3.3  
SB_27089| Best HMM Match : BAH (HMM E-Value=0.18)                      28   4.3  
SB_15594| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_15248| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-21)
          Length = 325

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = +2

Query: 272 SHLRKPQGISLGKY*CLLIKTSTSFRKYCGRHSHYNVFFL----WYLNIV*SMKSSVYVD 439
           SH   PQ +      CL+ K   + R  C   S +++  L    WY  I     ++    
Sbjct: 102 SHAMTPQALKANN--CLIHKPLVTARFVCYAASVFSIATLSVERWYA-ICQPFAAARKTV 158

Query: 440 EKKKVEALLSAILWIV 487
           +KKK++ L+ A++WI+
Sbjct: 159 QKKKLKILIFAVIWIL 174


>SB_27089| Best HMM Match : BAH (HMM E-Value=0.18)
          Length = 204

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 490 ENYPENSRKKSFYLFFFVYIYGRFHGLYNVK 398
           E  P+N+ KK+  +FF  Y + R  G+Y  K
Sbjct: 139 EEIPDNNEKKNGRVFFVRYGFDRNGGIYQAK 169


>SB_15594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 672

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 171 RFVFDIVFFSIFLHIVTVVGIVDSTYSDSVGTQTLTSENLKVF 299
           R +FD+ F +  L +      +  T+S  VGT+ LT    K F
Sbjct: 468 RVIFDLTFDNTSLQVPMATLPLPWTFSTRVGTRQLTDSQTKQF 510


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,454,551
Number of Sequences: 59808
Number of extensions: 283642
Number of successful extensions: 537
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)