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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0052
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)              155   3e-38
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_6002| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-26)                  29   3.8  
SB_52577| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)                   28   6.7  
SB_10426| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_50854| Best HMM Match : ig (HMM E-Value=6.1e-27)                    27   8.8  
SB_7224| Best HMM Match : TIL (HMM E-Value=8.2)                        27   8.8  

>SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)
          Length = 260

 Score =  155 bits (375), Expect = 3e-38
 Identities = 69/85 (81%), Positives = 78/85 (91%)
 Frame = +3

Query: 255 RGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVL 434
           RG KAEEILE+GLKV+EYEL +  FSATGNFGFGIQEHIDLGIKYDPSIGIYG+DF+VVL
Sbjct: 67  RGPKAEEILEKGLKVKEYELVKGCFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFFVVL 126

Query: 435 GRPGFNVAHRRRKTGKVGFPHRLTK 509
           GRPGFN++ R+ K G+VGFPHRLTK
Sbjct: 127 GRPGFNISKRKHKQGRVGFPHRLTK 151



 Score =  125 bits (301), Expect = 3e-29
 Identities = 61/74 (82%), Positives = 65/74 (87%)
 Frame = +1

Query: 61  NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 240
           N M+ L IRKL LNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI+
Sbjct: 2   NPMKELRIRKLVLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIS 61

Query: 241 VHCTVEELKQKKSL 282
           VHCTV   K ++ L
Sbjct: 62  VHCTVRGPKAEEIL 75



 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 506 KEDAMKWFQQK 538
           K+DAMKWFQQK
Sbjct: 151 KDDAMKWFQQK 161


>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 122 VTG*LVPPRCWSNSQDNSLYFP 187
           VT  LVPP  W+ SQD  +Y+P
Sbjct: 742 VTPPLVPPMPWTGSQDAGMYYP 763


>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 475 QEKWDFPTASQRRCYEVVPTEI*WYH 552
           Q  W+ PT +Q   Y    T+  WYH
Sbjct: 233 QANWNHPTKTQANWYHPTKTQANWYH 258


>SB_6002| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-26)
          Length = 376

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 311 FIFSDFQTPLKDFFCFS-SSTVQWTAIFSLRR 219
           F   +F+  +K  FC   S  +QWT IFS RR
Sbjct: 331 FTNKNFKLAVKRLFCGGVSKNMQWTGIFSSRR 362


>SB_52577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = -2

Query: 389 VLDTQVNVFLNTEAKITRGGEVVTPQFIFSDFQTPLKDFFCFSSSTVQ 246
           V D QVN FLN         E   P+  +    TP KD  C  S+T +
Sbjct: 21  VTDKQVNDFLNVCIDSKHHKEKPGPEVDYFHHCTPWKDHACCKSNTTK 68


>SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)
          Length = 551

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 315 RRDNFSATGNFGFGIQEHIDLGIKYD 392
           ++ ++SATG+F   ++EHI  G + D
Sbjct: 306 KKSHYSATGSFDGSVEEHISEGAQED 331


>SB_10426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 121 GDRLTRAAKVLEQLTGQQPVFSKARY 198
           G R TR A   +QLT  + VFSK  Y
Sbjct: 66  GSRRTRTAFTHQQLTALEKVFSKTHY 91


>SB_50854| Best HMM Match : ig (HMM E-Value=6.1e-27)
          Length = 770

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = -3

Query: 358 IPKPKLPVAEKLSRRNSYSLTFKPLSRISSALAPRLYNGQQSFHYDGYQ 212
           IPK KLP    L R    S    P+SR      P +    QS  +DGY+
Sbjct: 713 IPKAKLPPNNSLFRALDAS---GPVSRGPDRRMPDITRANQSARFDGYR 758


>SB_7224| Best HMM Match : TIL (HMM E-Value=8.2)
          Length = 147

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/69 (26%), Positives = 25/69 (36%)
 Frame = -3

Query: 469 RLLCATLKPGRXXXXXXXXXXXXIEGSYLIPKSMCS*IPKPKLPVAEKLSRRNSYSLTFK 290
           R  C T+KP                    IP   C    K K P+++ L     YS+ F+
Sbjct: 77  RCYCLTVKPCGSKISADPRICPENVADRRIPPLECDIQAKIKTPISKTLLHVRLYSIVFR 136

Query: 289 PLSRISSAL 263
           P     S+L
Sbjct: 137 PTKTQKSSL 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,404,337
Number of Sequences: 59808
Number of extensions: 405396
Number of successful extensions: 1125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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