Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0137.Seq
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30416| Best HMM Match : Prosystemin (HMM E-Value=2.2)               29   3.2  
SB_9388| Best HMM Match : SRP54_N (HMM E-Value=4.8)                    29   4.2  
SB_25813| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_12718| Best HMM Match : rve (HMM E-Value=0.0031)                    28   5.6  
SB_9683| Best HMM Match : RCSD (HMM E-Value=2.8)                       28   5.6  
SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)              28   5.6  
SB_2366| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.6  
SB_59625| Best HMM Match : P19Arf_N (HMM E-Value=5.1)                  28   7.4  
SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)                28   7.4  
SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17)                  28   7.4  
SB_31234| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_8912| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.4  
SB_5351| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.4  
SB_2690| Best HMM Match : Pre-SET (HMM E-Value=0.11)                   28   7.4  
SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_16949| Best HMM Match : DUF1174 (HMM E-Value=0.08)                  28   7.4  
SB_19130| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_3322| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.8  
SB_30681| Best HMM Match : An_peroxidase (HMM E-Value=4.3e-29)         27   9.8  

>SB_30416| Best HMM Match : Prosystemin (HMM E-Value=2.2)
          Length = 455

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
 Frame = +3

Query: 294 RKRRLVSSQINATISATTSARPIPLT--DSPFSHS-----HGCQQSKTTCAKSNRK*STR 452
           RK    ++ ++   S   +A+P PLT  DSPF  S     HG  +++T+    + +  T 
Sbjct: 169 RKEPKKAAVVSTPPSRAPAAKP-PLTRHDSPFVKSITESGHGKSRTETSSITISPRHPTN 227

Query: 453 QVRGNVARRPLKKNASTAGCQESAPARNYRDRDKTDLA 566
             RG+V+     +N+ST    E++P RN R     +L+
Sbjct: 228 SPRGSVSEAASPRNSST----ETSP-RNSRTEMNINLS 260


>SB_9388| Best HMM Match : SRP54_N (HMM E-Value=4.8)
          Length = 286

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 371 GFTVQPQPRVPAK*NHLRQKQQKIEYTPGARKRSPPTAQKKR 496
           G  V   P + A+ N LR KQ++I+Y        P   QK+R
Sbjct: 238 GSIVCKNPELVARLNKLRAKQEQIQYDQMVANVGPALEQKQR 279


>SB_25813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +1

Query: 376 HRSATATGASKVKPPAPKATENRVHARCEET*PADRSKKTPAPPDARNQPQPE 534
           H  A     ++ +P A K  E   H   E+   A++  +    P+A  QP+ E
Sbjct: 49  HPEAEKQPEAEKQPEAEKHPEAEKHPEAEKQPEAEKQPEAEKQPEAEKQPEAE 101


>SB_12718| Best HMM Match : rve (HMM E-Value=0.0031)
          Length = 1667

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 88   LVDDPNQFHGLAADQLTDDIVEQPVSINGIA-HNIKRSDFMSLPL 219
            +VDD  +F G     LTD  VE   S++G+A H +  S     PL
Sbjct: 1559 MVDDGTEFKGATTKLLTDYGVETSWSLDGLALHPVDGSPARVFPL 1603


>SB_9683| Best HMM Match : RCSD (HMM E-Value=2.8)
          Length = 232

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +3

Query: 270 SFTS*KQARKRRLVSSQINATISATTSARPIPLTDSPFSHSHGCQQSKTTCAKSN 434
           SFTS  ++  R  V+  ++    A  +  P P+T SP SHSH  +  KT+ +  N
Sbjct: 77  SFTS--KSETRESVTHSMSR-FPAYRTVNPTPVTQSPTSHSH--ESIKTSSSTKN 126


>SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)
          Length = 1167

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 240 GVQIHKKCRYSFTS*KQARKRRLVSSQINATISATTSARP 359
           G ++H KCR  +T    A K   V    N T++A  S RP
Sbjct: 43  GQRVHVKCRLHYTRRPAANKS--VDENKNPTVAARRSGRP 80


>SB_2366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 240 GVQIHKKCRYSFTS*KQARKRRLVSSQINATISATTSARPI 362
           G ++H KCR  +T    A K   V    N T++A  S  PI
Sbjct: 43  GQRVHVKCRLDYTRRPAANKS--VDENKNPTVAARRSGNPI 81


>SB_59625| Best HMM Match : P19Arf_N (HMM E-Value=5.1)
          Length = 1463

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 240  GVQIHKKCRYSFTS*KQARKRRLVSSQINATISATTSARPI 362
            G ++H KCR  +T    A K   V    N T++A  S  PI
Sbjct: 1263 GQRVHVKCRLDYTRRPAANKS--VDENKNPTVAARRSGSPI 1301


>SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)
          Length = 755

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 161 TGCSTMSSVNWSAANPWNWFGSSTKVSEQGVGELTAST 48
           TGC  +   + +  +PW  FG    + +   GE T ST
Sbjct: 399 TGCGPVFGGDSAFGDPWFGFGCDLLIDDNAGGEKTCST 436


>SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17)
          Length = 1420

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 400 HPWLWLNGESVSGIGLALVVADIVALIWLLTNRRLR 293
           + WLW  G  ++ +  AL    ++  +W   NR LR
Sbjct: 417 YSWLWTIGLLLTALPTALTNIAVIVAVWKDPNRNLR 452


>SB_31234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 240 GVQIHKKCRYSFTS*KQARKRRLVSSQINATISATTSARPI 362
           G ++H KCR  +T    A K   V    N T++A  S  PI
Sbjct: 43  GQRVHVKCRLDYTRRPAANKS--VDENKNPTVAARRSGSPI 81


>SB_8912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 240 GVQIHKKCRYSFTS*KQARKRRLVSSQINATISATTSARPI 362
           G ++H KCR  +T    A K   V    N T++A  S  PI
Sbjct: 43  GQRVHVKCRLDYTRRPAANKS--VDENKNPTVAARRSGSPI 81


>SB_5351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 419 LRQKQQKIEYTPGARKRSPPTAQKKRQHRRMP 514
           LR KQ+  +YT  +R  SPP      Q R  P
Sbjct: 533 LRAKQEAADYTDASRIASPPIPTLANQRRHGP 564


>SB_2690| Best HMM Match : Pre-SET (HMM E-Value=0.11)
          Length = 715

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 240 GVQIHKKCRYSFTS*KQARKRRLVSSQINATISATTSARPI 362
           G ++H KCR  +T    A K   V    N T++A  S  PI
Sbjct: 43  GQRVHVKCRLDYTRRPAANKS--VDENKNPTVAARRSGSPI 81


>SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 240 GVQIHKKCRYSFTS*KQARKRRLVSSQINATISATTSARPI 362
           G ++H KCR  +T    A K   V    N T++A  S  PI
Sbjct: 43  GQRVHVKCRLDYTRRPAANKS--VDENKNPTVAARRSGSPI 81


>SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1332

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 332 NIRHYQRQTDTANGFTVQPQPRVPAK*N-HLRQKQQKIEYTPGARKRSPPTAQKKRQHRR 508
           N  H+Q Q    N   ++    + A  + H   K + +   P A   +P  ++KKR+ RR
Sbjct: 433 NSEHFQNQQVNINNLVIKYDNTLKALLDKHAPLKAKLVTIRPKAAWYTPEVSEKKRKRRR 492

Query: 509 M 511
           +
Sbjct: 493 L 493


>SB_16949| Best HMM Match : DUF1174 (HMM E-Value=0.08)
          Length = 349

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +3

Query: 303 RLVSSQINATISATTSARPIPLTDSP 380
           RL +S I ATI    SA PIP T +P
Sbjct: 292 RLSASPIPATIGPPLSASPIPATTAP 317


>SB_19130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 658

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 344 YQRQTDTANGFTVQPQPRVPAK*NHLRQKQQKIEYTPGARKRSPPTAQKKRQ 499
           +   T   NG    P+P  PA+ +H R   Q  +Y  G  K   P  +K RQ
Sbjct: 338 WNNSTKVDNG-QATPRPERPARTSHSRTTSQPSQYC-GKMKYDDPLFEKVRQ 387


>SB_3322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 348 SARPIPLTDSPFSHSHGCQQSKTTCAKSN-RK*STRQVR 461
           S +P+P    P+   HG + +KT C+  N RK S R VR
Sbjct: 64  SPKPVPF---PYPSPHGNEPTKTLCSLVNLRKDSLRLVR 99


>SB_30681| Best HMM Match : An_peroxidase (HMM E-Value=4.3e-29)
          Length = 576

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 528 ARNYRDRDKTDLAAQYPARAKHRQ*QTAPRFAP 626
           A+   D DKT++A Q P    H   +  P++ P
Sbjct: 41  AKREIDEDKTEIAGQQPLARHHHYNRVVPKWEP 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,142,102
Number of Sequences: 59808
Number of extensions: 461960
Number of successful extensions: 1651
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1645
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)