Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0135X.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)               53   2e-07
SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.47 
SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)                   29   1.9  
SB_8483| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.9  

>SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 30/72 (41%), Positives = 42/72 (58%)
 Frame = +1

Query: 37  LQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWH 216
           +Q+ F QA   V++LK L  D Q L  Y  FKQAT G     +RPG  D+ GKAK+++WH
Sbjct: 13  VQDLFAQATDYVRSLKNL-RDEQKLLFYGLFKQATEGPCK-TSRPGFWDIVGKAKWESWH 70

Query: 217 KLAGTSKDDAQK 252
           +     ++ A K
Sbjct: 71  QHGKMPQEKAMK 82


>SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 301 SLSPMEAMSPSTISM*LSGHHPSKCRPVCAKRQIWLYP 188
           S  P+   +  T    LS HHP    PV   R+IW+YP
Sbjct: 307 SCCPLVKSAGQTYCRPLSKHHPQLPWPVYQIREIWIYP 344


>SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)
          Length = 382

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 348 YRVYYINTRAFSHHQRTSDFFDAIFI 425
           Y V Y NTRAF  H+R  DF   +F+
Sbjct: 43  YFVAYHNTRAFLRHKREHDFEFQVFV 68


>SB_8483| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 348 YRVYYINTRAFSHHQRTSDFFDAIFI 425
           Y V Y NTRAF  H+R  DF   +F+
Sbjct: 43  YFVAYHNTRAFLRHKREHDFEFQVFV 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,614,888
Number of Sequences: 59808
Number of extensions: 335759
Number of successful extensions: 711
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)