Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0121.Seq
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_16189| Best HMM Match : rve (HMM E-Value=0.3)                       29   3.0  
SB_10024| Best HMM Match : Pox_A32 (HMM E-Value=3.3)                   29   3.0  
SB_23352| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_6961| Best HMM Match : DUF1222 (HMM E-Value=2.7e-11)                29   3.0  
SB_31063| Best HMM Match : TFIIB (HMM E-Value=0.0023)                  29   5.3  
SB_28906| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)                 28   9.2  
SB_44786| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1056

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 499 SFHRRTLLQLIELHASRWQLPGCAVLYY 582
           ++ R  L+QL EL A++W+L   A LYY
Sbjct: 300 NYARMRLMQLKELRAAKWKLRPSACLYY 327


>SB_16189| Best HMM Match : rve (HMM E-Value=0.3)
          Length = 595

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
 Frame = -2

Query: 316 QHVPGLGAGSPSLDGPAPQLAYISSKNDRNAINRG------RPPPIIAPNSLSLSWYHC 158
           +H P LG  S S        AY++S + R   +RG      R    +   + +L WYHC
Sbjct: 403 RHSPYLGFRSTSFTPLGTAFAYMASVHTRRTSSRGIRLNMRRNAMFVYAKTKALMWYHC 461


>SB_10024| Best HMM Match : Pox_A32 (HMM E-Value=3.3)
          Length = 651

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
 Frame = -2

Query: 316 QHVPGLGAGSPSLDGPAPQLAYISSKNDRNAINRG------RPPPIIAPNSLSLSWYHC 158
           +H P LG  S S        AY++S + R   +RG      R    +   + +L WYHC
Sbjct: 582 RHSPYLGFRSTSFTPLGTAFAYMASVHTRRTSSRGNRLNMRRNAMFVYAKTKALMWYHC 640


>SB_23352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1830

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
 Frame = -2

Query: 316  QHVPGLGAGSPSLDGPAPQLAYISSKNDRNAINRG------RPPPIIAPNSLSLSWYHC 158
            +H P LG  S S        AY++S + R   +RG      R    +   + +L WYHC
Sbjct: 1761 RHSPYLGFRSTSFTPLGTAFAYMASVHTRRTSSRGIRLNMRRNAMFVYAKTKALMWYHC 1819


>SB_6961| Best HMM Match : DUF1222 (HMM E-Value=2.7e-11)
          Length = 161

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -2

Query: 292 GSPSLDGPAPQLAYISSKNDRNAINRGRPPPIIAPNSLSLSWYHCWHVLSS 140
           GS SL+GP  +  ++    D N     RP P++AP+   + W   +  L S
Sbjct: 15  GSHSLEGPWTEYKFLYKPGDVN-----RPLPVVAPHQPRVDWQMWFAALGS 60


>SB_31063| Best HMM Match : TFIIB (HMM E-Value=0.0023)
          Length = 268

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 295 AGSPSLDGPAPQLAYISSKNDRNAINRGRPPPI 197
           + SP+  G   QL Y  SKN  + +NR RP P+
Sbjct: 234 SASPAQKGEVVQL-YYGSKNRSSELNRARPHPL 265


>SB_28906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1191

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 245 QQERQERHQPRSSTADHRAQQLVPIVVPLLARVKQRLEEG 126
           QQ++Q++ Q +      +A + VP + P+  R   R++EG
Sbjct: 391 QQQQQQQQQQQEKQPSEKAPENVPRMSPMPQRSNARVQEG 430


>SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)
          Length = 681

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 311 VLLALICKCCEDCIRQPV 364
           V L L+ +CCED I QPV
Sbjct: 273 VCLMLLAQCCEDAIVQPV 290


>SB_44786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 141 ATRGRFPSARARPRRC 94
           AT+GRF S RA P RC
Sbjct: 74  ATKGRFHSERAEPERC 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,233,189
Number of Sequences: 59808
Number of extensions: 527868
Number of successful extensions: 1513
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1506
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)