Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0109.Seq
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05)               32   0.24 
SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)         31   0.41 
SB_33587| Best HMM Match : SAMP (HMM E-Value=2.7)                      29   2.9  
SB_49328| Best HMM Match : DUF1091 (HMM E-Value=1.6)                   28   3.8  
SB_11573| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)           28   3.8  
SB_16310| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)                    28   5.1  
SB_6206| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.1  
SB_484| Best HMM Match : bZIP_1 (HMM E-Value=1.4)                      28   5.1  
SB_48760| Best HMM Match : bZIP_1 (HMM E-Value=0.95)                   27   6.7  
SB_21412| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   8.9  

>SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05)
          Length = 322

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 268 NIYTLGI*CFYERLFCNVVDIYLYYLLPWSMYRECERVRRMH 393
           N YT+ I C+Y  + C V  +YL++ L   + +ECE     H
Sbjct: 158 NTYTILILCYYPAILCIVKPVYLFFGL--GVDKECESCYSFH 197


>SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)
          Length = 428

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
 Frame = +2

Query: 230 LNMQFFFFLSQTKIYTL*GSNVFTKGY-FVTLLI--FIY-IIYYRGVCIESASECVGCTC 397
           L++ FFF  + T I T    +V  +GY ++ L +   +Y ++YY G    S +E +    
Sbjct: 350 LDVIFFFICAITMIVTY---SVLLRGYKYMELSLDKLVYNLVYYFGATKYSVTEIMKIVL 406

Query: 398 AREHRRDTPPTSAPHTRTCTPR 463
              HRR+   +   H  +C PR
Sbjct: 407 CSIHRRNVYVSLYIHLLSCAPR 428


>SB_33587| Best HMM Match : SAMP (HMM E-Value=2.7)
          Length = 488

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 367 ECERVRRMHVRARAPPRHAPHLR 435
           +CE V R H+  R+PP + P L+
Sbjct: 423 QCESVARKHMPRRSPPAYKPQLK 445


>SB_49328| Best HMM Match : DUF1091 (HMM E-Value=1.6)
          Length = 555

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 108 WRPKISKRSTTKHKNGLYRFFVENVTFYTLAVDDERKTVK 227
           + P   K  T KH  GL+   + ++T     + DER+ V+
Sbjct: 174 YEPAAMKAFTQKHSPGLFEMLLSSITREDSRLSDERQAVQ 213


>SB_11573| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 405

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 352 WSMYRECERVRRMHVRARAPPRHAP 426
           WSM+ EC  + R+ V +R PP  +P
Sbjct: 146 WSMFNECFPLIRVKVSSRDPPYMSP 170


>SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)
          Length = 806

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 383 VGCTCAREHRRDTPPTSAPHTRTCTPRTLHLTS 481
           V  + + ++RR +P + +PH+ T TP    +TS
Sbjct: 653 VSSSASSKNRRSSPVSRSPHSTTGTPNATGITS 685


>SB_16310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 352 WSMYRECERVRRMHVRARAPPRHAP 426
           WSM+ EC  + R+ V +R PP  +P
Sbjct: 12  WSMFNECFPLIRVKVSSRDPPYMSP 36


>SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)
          Length = 1136

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 352 TVINNINKYQQRYKIAFRKNIRSLKCI 272
           T++ + N+Y Q Y+  F     SLKCI
Sbjct: 179 TMVTSENEYVQEYRARFEIKTNSLKCI 205


>SB_6206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 117 KISKRS-TTKHKNGLYRFFVENVTFYTLAVDDER-KTVK 227
           KIS +S T KHK  L R   ++  FYT   D  + KT+K
Sbjct: 34  KISTKSKTAKHKKDLSRLQKKDPEFYTFLQDKSKSKTIK 72


>SB_484| Best HMM Match : bZIP_1 (HMM E-Value=1.4)
          Length = 263

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 352 TVINNINKYQQRYKIAFRKNIRSLKCI 272
           T++ + N+Y Q Y+  F     SLKCI
Sbjct: 179 TMVTSENEYVQEYRARFEIKTNSLKCI 205


>SB_48760| Best HMM Match : bZIP_1 (HMM E-Value=0.95)
          Length = 221

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 349 VINNINKYQQRYKIAFRKNIRSLKCI 272
           ++ + N+Y+Q Y+  F     SLKCI
Sbjct: 1   MVTSENEYEQEYRARFEIKTNSLKCI 26


>SB_21412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1015

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 123  KSSVARSNLGGKV-PKPSARAGRERWGAGLTPLAADPARPLP 1
            +S  + S+L  K+ P P+ R+G+ +   G  P+ A  +RP+P
Sbjct: 937  ESDFSLSSLDDKLKPVPAQRSGQGKRDQGNAPVPASRSRPVP 978


>SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1980

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 377 ECVG--CTCAREHRRDTPPTSAPHTRTCTPRTLHLTS 481
           +C G  C C  +H ++TP T      TC P ++H+ S
Sbjct: 530 QCYGKECWCVDKHGQETPGTRTTGLITC-PASVHVLS 565


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,533,716
Number of Sequences: 59808
Number of extensions: 288051
Number of successful extensions: 879
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)