Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0108.Seq
         (810 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20512| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)                 28   7.8  
SB_30186| Best HMM Match : DUF1272 (HMM E-Value=8)                     28   7.8  
SB_27170| Best HMM Match : RVT_1 (HMM E-Value=1.3e-31)                 28   7.8  
SB_8622| Best HMM Match : RVT_1 (HMM E-Value=1.8e-35)                  28   7.8  
SB_6973| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.8  
SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3)                        28   7.8  

>SB_20512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 451

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -1

Query: 795 RLWSLILPMSHHRNDRCLEKQKKKLQINLFSFSI 694
           +LW+  LP+ H RN  CL K K  L    FSFS+
Sbjct: 50  KLWNS-LPL-HIRNTDCLSKFKSSLNTYYFSFSV 81


>SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)
          Length = 556

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = -2

Query: 119 QLMDIGLPKGSK**PVLRSLYPADLRALLQ 30
           + ++ G+P+GS   PV+ +LY ADL++ LQ
Sbjct: 210 ETVEFGVPQGSILGPVIFNLYVADLQSELQ 239


>SB_30186| Best HMM Match : DUF1272 (HMM E-Value=8)
          Length = 162

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 750 CHFCDVTLAKSMTKGVGAKF 809
           C FCD+ +A+ +TKG  A+F
Sbjct: 11  CPFCDLRIAEYVTKGESARF 30


>SB_27170| Best HMM Match : RVT_1 (HMM E-Value=1.3e-31)
          Length = 265

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = -2

Query: 119 QLMDIGLPKGSK**PVLRSLYPADLRALLQ 30
           + ++ G+P+GS   PV+ +LY ADL++ LQ
Sbjct: 162 ETVEFGVPQGSILGPVIFNLYVADLQSELQ 191


>SB_8622| Best HMM Match : RVT_1 (HMM E-Value=1.8e-35)
          Length = 308

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = -2

Query: 119 QLMDIGLPKGSK**PVLRSLYPADLRALLQ 30
           + ++ G+P+GS   PV+ +LY ADL++ LQ
Sbjct: 176 ETVEFGVPQGSILGPVIVNLYVADLQSELQ 205


>SB_6973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 200

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = -2

Query: 119 QLMDIGLPKGSK**PVLRSLYPADLRALLQ 30
           + ++ G+P+GS   PV+ +LY ADL++ LQ
Sbjct: 141 ETVEFGVPQGSILGPVIFNLYVADLQSELQ 170


>SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3)
          Length = 471

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = -2

Query: 119 QLMDIGLPKGSK**PVLRSLYPADLRALLQ 30
           + ++ G+P+GS   PV+ +LY ADL++ LQ
Sbjct: 408 ETVEFGVPQGSILGPVIVNLYVADLQSELQ 437


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,885,228
Number of Sequences: 59808
Number of extensions: 469340
Number of successful extensions: 881
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)