Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0101.Seq
(592 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5808| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.100
SB_52294| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21) 30 1.6
SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_26305| Best HMM Match : Integrase_Zn (HMM E-Value=9.6) 28 5.0
SB_28488| Best HMM Match : PAX (HMM E-Value=0) 28 6.6
SB_32504| Best HMM Match : TolA (HMM E-Value=0.52) 28 6.6
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_19175| Best HMM Match : 7tm_1 (HMM E-Value=4.2e-05) 28 6.6
SB_22884| Best HMM Match : Tctex-1 (HMM E-Value=9.4e-26) 27 8.7
SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0) 27 8.7
SB_3663| Best HMM Match : MBT (HMM E-Value=0) 27 8.7
>SB_5808| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 33.9 bits (74), Expect = 0.100
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 208 AGEGAQKEDQRSRKRDKGKPEPKPAKGVTVPTRKGIKXTQNVKSQ 342
A +KE ++ RK+ +GKP+P+ K PTRK +K + + +
Sbjct: 293 ATSNEKKEQEKERKKSEGKPKPRSEK-EKQPTRKRVKRPEKLNKR 336
>SB_52294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 128 YGVGVVNRYALFLDDETDPLDALKAREQ 211
Y +GV NR+ L L DE DP K E+
Sbjct: 6 YSIGVNNRFGLLLSDEEDPETTFKESEK 33
>SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21)
Length = 791
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 199 SARAGEGAQ--KEDQRSRKRDKGKPEPKPAKGVTVPTRKGIKXTQNVKSQDIKSGE 360
+A GE A +D + K DK K +P+ K VT+ + G+K VK + S +
Sbjct: 135 NADYGEAASLTADDSTAHKSDK-KHDPEAKKQVTITVQPGVKPKPTVKKRSTPSAD 189
>SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 211 GEGAQKEDQRSRKRDKGKPEPKPAKGVTVPTRKG 312
G+ +QK+++ RK ++GKP P +K + + G
Sbjct: 46 GKTSQKDEKPERKSNRGKPGPNDSKYIRLAKAGG 79
>SB_26305| Best HMM Match : Integrase_Zn (HMM E-Value=9.6)
Length = 222
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 214 EGAQKEDQRSRK---RDKGKPEPKPAKGVTVPTRKGIKXTQNVKSQD 345
E ++ +DQ + K +DK P P A T T+ ++ T N + QD
Sbjct: 133 ETSKPQDQETSKPQDQDKQAPRPTQASRKTKSTKPQVQETSNAQDQD 179
>SB_28488| Best HMM Match : PAX (HMM E-Value=0)
Length = 551
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +1
Query: 226 KEDQRSRKRDKGKPEPKPAKGVTVPTRKGIKXTQNVKSQDIKSGEQQKG 372
K++++ + DKGK + K K ++P+R + ++ S K ++ G
Sbjct: 171 KKERKDEEDDKGKEDEKVEKNSSLPSRHNFSSSYSIASILKKPSAEEDG 219
>SB_32504| Best HMM Match : TolA (HMM E-Value=0.52)
Length = 422
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 196 KSARAGEGAQKEDQRSRKRDKGKPEPKPAK 285
K +R E +KE++ S+++DK K +P K
Sbjct: 174 KESREKEKTKKEEKESKEKDKQKKDPPSGK 203
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 196 KSARAGEGAQK-EDQRSRKRDKGKPEPKPAKGVTVPTRKGIKXTQNVKSQDIKSGEQQK 369
+ +R+ ++K + QRSR + K +KG +K K + + KS+D++S + K
Sbjct: 719 RRSRSRSSSRKGKRQRSRSWSYDEDYSKSSKGKATAAKKDKKLSIDAKSKDVRSKSKSK 777
>SB_19175| Best HMM Match : 7tm_1 (HMM E-Value=4.2e-05)
Length = 431
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = +1
Query: 178 RSS*CVKSARAGEGAQKEDQRSRKRDKGKPEPKPAK----GVTVPTRKGIKXTQNVKSQD 345
RS+ +SA G Q ++ R + GK + P +VP KG+ T NV Q+
Sbjct: 365 RSNSSQQSAITGRIHQAQETRRHRLQLGKSKSSPVSTSKTSSSVPENKGVNCTSNVGGQN 424
>SB_22884| Best HMM Match : Tctex-1 (HMM E-Value=9.4e-26)
Length = 439
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +1
Query: 205 RAGEGAQKEDQRSRKRDKGKPEPKPAKGVTVPTRKGIKXTQNVKSQDIKSG 357
+A + + +R+ K K + EP P KG+T + Q+V + + G
Sbjct: 7 KADQHDTSKAERAAKTLKKRGEPTPVKGLTTRPASSVSIAQSVATPHSRKG 57
>SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)
Length = 1182
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 202 ARAGEGAQKEDQRSRKRDKGKPEPKPAKGVTVPTRKG 312
A + + A ++ + K+ K P +PAKGVT +R G
Sbjct: 1125 APSSKSADSDEAQPGKK-KAAPRKRPAKGVTAASRDG 1160
>SB_3663| Best HMM Match : MBT (HMM E-Value=0)
Length = 327
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +1
Query: 199 SARAGEGAQKEDQRSRKRDKGKPEPKPAKGVTVPT 303
SA + + ++E++ K + KP+P+P +PT
Sbjct: 158 SAASSDDEEEEEEEEEKEKEEKPKPEPELAPPLPT 192
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,188,981
Number of Sequences: 59808
Number of extensions: 260335
Number of successful extensions: 729
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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