Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0082.Seq
(627 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8675| Best HMM Match : Aminotran_1_2 (HMM E-Value=0) 68 7e-12
SB_11833| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 5e-10
SB_51759| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_53258| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_32472| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-08) 30 1.3
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_27922| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_50443| Best HMM Match : NinG (HMM E-Value=5.6) 28 5.4
SB_46583| Best HMM Match : Hus1 (HMM E-Value=0) 28 5.4
SB_20938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_17011| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_3961| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06) 28 7.1
SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07) 27 9.4
SB_4159| Best HMM Match : Vpu (HMM E-Value=2) 27 9.4
>SB_8675| Best HMM Match : Aminotran_1_2 (HMM E-Value=0)
Length = 512
Score = 67.7 bits (158), Expect = 7e-12
Identities = 37/83 (44%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Frame = +2
Query: 2 GKPFVLPSVRKAEEILHSRG-----LNHEYAPISGEATYTDAVAKLAFGEDSPVIKNRSN 166
GKP+VLP V K E L ++G LNHEY I G ++DA KL G D P I
Sbjct: 111 GKPWVLPVVSKVETQL-AQGIADGTLNHEYLGIDGLRQFSDAACKLLLGGDHPAIAQNRV 169
Query: 167 CTVQTLSGTGALRLGLEFITKHY 235
C +Q++SGTG++ LGL+F+ + Y
Sbjct: 170 CGIQSISGTGSVFLGLKFLYQFY 192
Score = 64.9 bits (151), Expect = 5e-11
Identities = 26/47 (55%), Positives = 38/47 (80%)
Frame = +2
Query: 485 QRKEIIPVFDMAYQGFANGDVDNDAFAVRLFVKEGHQVMLAQNFAKN 625
+++++ P FD AYQGFA+GDVD DA+AVR F +G +++ AQ+FAKN
Sbjct: 277 KKRQLFPYFDTAYQGFASGDVDEDAWAVRYFASQGFELIAAQSFAKN 323
Score = 53.6 bits (123), Expect = 1e-07
Identities = 21/42 (50%), Positives = 30/42 (71%)
Frame = +3
Query: 384 KNSRSSIILLHACAHNPTGVDPKPSDWEQLSKVIKERKLFPF 509
K SII+LH CAHNPTGVD W +++ ++K+R+LFP+
Sbjct: 243 KAPEGSIIVLHECAHNPTGVDLSHDQWIKIADIMKKRQLFPY 284
Score = 43.6 bits (98), Expect = 1e-04
Identities = 28/59 (47%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Frame = +2
Query: 2 GKPFVLPSVRKAEEILHSRG-----LNHEYAPISGEATYTDAVAKLAFGEDSPVI-KNR 160
GKP+VLP V K E L ++G LNHEY I G ++DA KL G D P I +NR
Sbjct: 46 GKPWVLPVVSKVETQL-AQGIADGTLNHEYLGIDGLRQFSDAACKLLLGGDHPAIAQNR 103
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 265 PTWGNHPQICNTLNLPH-KKYRYFDPKTNGFDLQGALEDISKIPE 396
PTWGNH + + ++YRY+ +T D ED+ K PE
Sbjct: 202 PTWGNHLKTLKAVGFTDIREYRYYKAETCSVDFDAMWEDLEKAPE 246
>SB_11833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 636
Score = 61.7 bits (143), Expect = 5e-10
Identities = 25/37 (67%), Positives = 33/37 (89%)
Frame = +2
Query: 515 MAYQGFANGDVDNDAFAVRLFVKEGHQVMLAQNFAKN 625
MAYQGFA GD D DA AVR+F+++GH+++LAQ+FAKN
Sbjct: 1 MAYQGFATGDTDRDAQAVRMFIEDGHKIVLAQSFAKN 37
>SB_51759| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 43.6 bits (98), Expect = 1e-04
Identities = 28/59 (47%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Frame = +2
Query: 2 GKPFVLPSVRKAEEILHSRG-----LNHEYAPISGEATYTDAVAKLAFGEDSPVI-KNR 160
GKP+VLP V K E L ++G LNHEY I G ++DA KL G D P I +NR
Sbjct: 7 GKPWVLPVVSKVETQL-AQGIADGTLNHEYLGIDGLRQFSDAACKLLLGGDHPAIAQNR 64
>SB_53258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 811
Score = 31.5 bits (68), Expect = 0.58
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 136 RQSCHQK*EQLYCTDIVRHWRTPTRTRVHNETLR*GKGDLL 258
+Q CH K EQL D+ ++T +++NET R D L
Sbjct: 148 KQVCHDKYEQLPYDDVQNFFKTHISLKINNETFRSKTKDFL 188
>SB_32472| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-08)
Length = 289
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/107 (19%), Positives = 48/107 (44%)
Frame = -1
Query: 381 YILECSLQIETIGLGIEVTVFLVRQVEGVADLRVVSPSRRREQISFALA*CFVMNSSPSR 202
++L +L GL + T+++ ++G+A ++ P I + + ++
Sbjct: 48 FLLSLALSDLATGL-VSQTLYICSLIQGLAGIKTFCPVDLGALIGHFVGTILLTSTVSLL 106
Query: 201 SAPVPDNVCTVQLLLFLMTGLSSPKASLATASVYVASPLMGAYSWLS 61
D ++L + +T +++PKA + + V S L+G + LS
Sbjct: 107 FLATADRFLAIELAMRYVTLVTTPKAIVVLTAAVVLSILLGTFHRLS 153
>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1778
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -1
Query: 624 FLAKFCANMTWCPSLTKRRTAKASLST--SPLAKP*YAMSKTGI 499
F K+C N+T CP K++ KA L T SP K Y + G+
Sbjct: 601 FEVKYC-NLTKCPERDKKKDYKAVLGTPGSPTVKKAYGQIEVGM 643
>SB_27922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1704
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +2
Query: 65 NHEYAPISGEATY-TDAVAKLAFGEDSPVIKNRSNCTVQTLSGTGALRLGLEFITKHYAK 241
+H + S E Y TD E I+N S C + +G+G ++I HYAK
Sbjct: 58 DHIFENYSFEHEYPTDLPITSYHHEIVNTIENNSACVIFGPTGSGKTTQVPQYILDHYAK 117
Query: 242 AKEICS 259
+ C+
Sbjct: 118 QRRYCN 123
>SB_50443| Best HMM Match : NinG (HMM E-Value=5.6)
Length = 477
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 254 CSRRLLGETTRKSATPSTCRTRNTVTSIPRPMVSICREHSRIYQKFPKFHYSVARV 421
C R +G+T RK+ T RT + +P + + R + + F +FH + RV
Sbjct: 55 CHRHTMGQTVRKARHSGTQRTGHK-RDLPGEGIQL-RGQNLAFSAFDRFHDGLGRV 108
>SB_46583| Best HMM Match : Hus1 (HMM E-Value=0)
Length = 646
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 491 KEIIPVFDMAYQGFANGDVDNDAFAVRLFVKEGHQVMLA 607
+E +P++ AYQ G D +R+F ++G +LA
Sbjct: 570 EEFLPIYTSAYQKKQTGSADEFVEGLRVFDRDGTGTVLA 608
>SB_20938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -1
Query: 201 SAPVPDNVCTVQLLLFLMTGLSSPKASLATASVYVASPLMGAYSWLS 61
+ PV N+CTV ++ F++ GL +AT + V+ + W++
Sbjct: 24 AVPV-SNICTVFIIYFILRGLLHKTVKVATVARVVSDIIFSHPYWIT 69
>SB_17011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 445 STPVGLCAHACNRIMELREFLIYPRVLP 362
S+ + C+ A N EL EFL YP + P
Sbjct: 19 SSEIQTCSFATNITAELNEFLYYPHIDP 46
>SB_3961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 274 GNHPQICNTLNLPHKKYRYFDPKTNGF-DLQGALEDISKIPEVP 402
GN T+ + K Y +PK N ++G LED+ K+P +P
Sbjct: 45 GNTMPFTGTVYVEFIKGVYDNPKINAMLIMKGTLEDVPKLPALP 88
>SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)
Length = 863
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 180 VCTVQLLLFLMTGLSSPKASLATASVYVASPLM 82
+CTV + L T L K SL S+Y+ PL+
Sbjct: 680 ICTVTMSLGFFTPLIPGKISLTLFSIYILLPLL 712
>SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 821
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 180 VCTVQLLLFLMTGLSSPKASLATASVYVASPLM 82
+CTV +L+ + T L K S+ +YV SPL+
Sbjct: 154 ICTVTILVGVFTPLIPLKISVTLFLIYVFSPLL 186
>SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07)
Length = 621
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/52 (21%), Positives = 26/52 (50%)
Frame = -1
Query: 162 LLFLMTGLSSPKASLATASVYVASPLMGAYSWLSPLL*RISSAFLTEGKTNG 7
+ FLM G++S + ++ + L+ A+ W++ + + F +G+ G
Sbjct: 568 VFFLMVGVNSVRGLCKVVAIGIHFFLLAAFLWMAVMAYDVHRTFTNQGEMTG 619
>SB_4159| Best HMM Match : Vpu (HMM E-Value=2)
Length = 779
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -2
Query: 464 PVAGLGVNTGGVVCARVQQNNGTSGIFDISSSAPCKSKPLVLG 336
PV+ + TGG VC +G I +++ P +PL G
Sbjct: 391 PVSMEPLTTGGAVCTGPLTTDGPVSIEPLTTDGPVSMEPLTTG 433
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,783,106
Number of Sequences: 59808
Number of extensions: 518853
Number of successful extensions: 1561
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1554
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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