Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0066.Seq
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52270| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_26556| Best HMM Match : DUF1378 (HMM E-Value=9.5)                   30   1.8  
SB_2398| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_10971| Best HMM Match : DUF1378 (HMM E-Value=3.4)                   30   2.3  
SB_34427| Best HMM Match : DUF1378 (HMM E-Value=6.2)                   29   3.1  
SB_34105| Best HMM Match : Extensin_2 (HMM E-Value=4.8)                28   7.2  
SB_15762| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_52270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 367 FHVHIYMFPDTSVLVKSI--CLFIISQNFLKINSSRGIKKTKAMYTNTK 507
           F   I M  DT ++ +SI  CLF++  NFLKI  +R  +K    +   K
Sbjct: 33  FAYDIEMRMDTKLIHESIVCCLFLVRGNFLKIERNRRHRKIFGKFAKKK 81


>SB_26556| Best HMM Match : DUF1378 (HMM E-Value=9.5)
          Length = 116

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +1

Query: 367 FHVHIYMFPDTSVLVKSI--CLFIISQNFLKINSSRGIKKTKAMYTNTKQTKFYLNFKHY 540
           F   I M  DT ++ +SI  CLF++  NFLKI  +R  +K    +   K   F L  + +
Sbjct: 53  FAYDIEMRMDTKLIHESIVCCLFLVRGNFLKIERNRRHRKVFGKFAK-KSLNFNLRPESF 111

Query: 541 QV 546
            V
Sbjct: 112 LV 113


>SB_2398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 367 FHVHIYMFPDTSVLVKSI--CLFIISQNFLKINSSRGIKKTKAMYTNTK 507
           F   I M  DT ++ +SI  CLF++  NFLKI  +R  +K    +   K
Sbjct: 53  FAYDIEMRLDTKLIHQSIVCCLFLVRGNFLKIERNRRHRKIFGKFAKKK 101


>SB_10971| Best HMM Match : DUF1378 (HMM E-Value=3.4)
          Length = 228

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 367 FHVHIYMFPDTSVLVKSI--CLFIISQNFLKINSSRGIKK 480
           F   I M  DT ++ +SI  CLF++  NFLKI  +R  +K
Sbjct: 53  FAYDIEMRMDTKLIHESIVCCLFLVRGNFLKIERNRRHRK 92



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 367 FHVHIYMFPDTSVLVKSI--CLFIISQNFLKINSSRGIKK 480
           F   I M  DT ++ +SI  CLF++  NFLKI   R  +K
Sbjct: 165 FAYDIEMRMDTKLIHESIVCCLFLVRGNFLKIERIRRHRK 204


>SB_34427| Best HMM Match : DUF1378 (HMM E-Value=6.2)
          Length = 116

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 367 FHVHIYMFPDTSVLVKSI--CLFIISQNFLKINSSRGIKK 480
           F   I M  DT ++ +SI  CLF++  NFLKI  +R  +K
Sbjct: 53  FAYDIEMRMDTKLVHESIVCCLFLVRGNFLKIERNRRHRK 92


>SB_34105| Best HMM Match : Extensin_2 (HMM E-Value=4.8)
          Length = 623

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -1

Query: 299 HYCISIL--LLSHIKYFTR*ILKRFSYNYVYTAILP*CILT*YIIVQCFCNYFF 144
           +YC SI   +L H  Y T        Y Y +T+I    +L   ++ Q +CN ++
Sbjct: 286 YYCTSITAPVLLHQYYCTSITAPVLLYQYYFTSITAPVLLQPVLLHQYYCNQYY 339


>SB_15762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +1

Query: 451 KINSSRGIKKTKAMYTNTKQTKFYLNFKHYQVF*QSPIRRNYFNIGEKRLYCV*K 615
           +  +S G+   K + T+     F + F   Q F  SPI RN+     K +  V K
Sbjct: 78  RARNSHGLNIKKVLGTSQSPETFRVTFWFQQNFENSPIERNHLEYEPKEVQTVLK 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,691,722
Number of Sequences: 59808
Number of extensions: 408500
Number of successful extensions: 631
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)