Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302B03f
         (421 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)             103   5e-23
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)              97   4e-21
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)              86   1e-17
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)         85   2e-17
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)               82   2e-16
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)              82   2e-16
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         81   3e-16
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)          74   6e-14
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)         63   1e-10
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         52   3e-07
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   1e-04
SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2)                     37   0.006
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.024
SB_20549| Best HMM Match : Acyltransferase (HMM E-Value=1.8e-27)       29   2.1  
SB_39340| Best HMM Match : DUF1656 (HMM E-Value=2.9)                   28   3.6  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)                  27   4.8  
SB_45173| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)              27   8.3  

>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score =  103 bits (248), Expect = 5e-23
 Identities = 51/76 (67%), Positives = 59/76 (77%)
 Frame = +3

Query: 6   MANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMTVTGANDRPVKDVVI 185
           MANAGKDTNGSQFFITTVKT WLDG+HVVFGKVLEGMDVV+K+E  V      PVK  +I
Sbjct: 1   MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKLE-NVNVKGSTPVKTCMI 59

Query: 186 SDTKTEVVAEPFSVTK 233
            D+ T  + +PF+V K
Sbjct: 60  DDSGTLPLDKPFNVEK 75


>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 97.5 bits (232), Expect = 4e-21
 Identities = 43/78 (55%), Positives = 58/78 (74%)
 Frame = +3

Query: 6   MANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMTVTGANDRPVKDVVI 185
           MANAGK+TNGSQF+ITT+KT WLDG H  FGKVLEGMDVV++IE T    +D+P+ +V I
Sbjct: 122 MANAGKNTNGSQFYITTIKTSWLDGSHTCFGKVLEGMDVVRRIENTRVDTHDKPLDEVKI 181

Query: 186 SDTKTEVVAEPFSVTKES 239
           +   +  +  P+ V K++
Sbjct: 182 TGIGSIPIESPYEVAKDA 199


>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 38/40 (95%), Positives = 40/40 (100%)
 Frame = +3

Query: 3   SMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDV 122
           SMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL+GM+V
Sbjct: 140 SMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLKGMEV 179


>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
          Length = 99

 Score = 85.0 bits (201), Expect = 2e-17
 Identities = 38/62 (61%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
 Frame = +3

Query: 3   SMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMTVTG-ANDRPVKDV 179
           SMANAG +TNGSQFFIT V TPWLD +H VFG+V++GMDV Q+I +  T   ND+P +D+
Sbjct: 31  SMANAGPNTNGSQFFITVVPTPWLDNKHTVFGRVVKGMDVAQQISLVKTNPKNDQPYEDI 90

Query: 180 VI 185
            I
Sbjct: 91  KI 92


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 39/63 (61%), Positives = 48/63 (76%)
 Frame = +3

Query: 3   SMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMTVTGANDRPVKDVV 182
           SMAN+G +TNGSQFF+TT KT WLDG+HVVFG V+EG DVV+K+E  V   + +  K VV
Sbjct: 232 SMANSGPNTNGSQFFLTTEKTDWLDGKHVVFGNVIEGFDVVRKME-AVGSQSGKASKKVV 290

Query: 183 ISD 191
           I D
Sbjct: 291 IDD 293


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 43/76 (56%), Positives = 53/76 (69%)
 Frame = +3

Query: 3   SMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMTVTGANDRPVKDVV 182
           SMANAG  TNGSQFF+ T KT WLDG+HVVFG V +GMDVV+KIE  V   + +  K VV
Sbjct: 98  SMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKIE-KVGSDSGKTSKKVV 156

Query: 183 ISDTKTEVVAEPFSVT 230
           I+D+ + + A    VT
Sbjct: 157 IADSASVLQAFDAVVT 172


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 81.4 bits (192), Expect = 3e-16
 Identities = 37/47 (78%), Positives = 43/47 (91%)
 Frame = +3

Query: 3   SMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMT 143
           SMAN+G +TNGSQFFITTV TP LDGRHVVFGKVL+GMDVV+++E T
Sbjct: 196 SMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLKGMDVVRELEAT 242


>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
          Length = 49

 Score = 73.7 bits (173), Expect = 6e-14
 Identities = 32/44 (72%), Positives = 37/44 (84%)
 Frame = +3

Query: 3   SMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 134
           SMANAG  TNGSQFF+ T KT WLDG+HVVFG V +GMDVV+K+
Sbjct: 4   SMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKM 47


>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
          Length = 145

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 28/62 (45%), Positives = 43/62 (69%)
 Frame = +3

Query: 6   MANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMTVTGANDRPVKDVVI 185
           MAN G+ TNGSQF+IT    PW+D ++V FG+V+EG++V+  +E   T  N+RP  +  +
Sbjct: 74  MANKGRHTNGSQFYITLQPAPWMDTKYVAFGQVIEGLNVLDVLEGQET-FNERPKVECRV 132

Query: 186 SD 191
           +D
Sbjct: 133 AD 134


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 29/63 (46%), Positives = 39/63 (61%)
 Frame = +3

Query: 3   SMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMTVTGANDRPVKDVV 182
           SMAN G +TNGSQFFI           HVVFG V++G ++V++IE   T   +RP  DV 
Sbjct: 53  SMANRGPNTNGSQFFII----------HVVFGHVIQGEELVRQIESLPTNEKNRPNADVK 102

Query: 183 ISD 191
           +S+
Sbjct: 103 VSN 105


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 20/35 (57%), Positives = 25/35 (71%)
 Frame = +3

Query: 3   SMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL 107
           SMAN G ++NGSQFFI   K P LD ++ +FGK L
Sbjct: 308 SMANNGPNSNGSQFFICYGKQPHLDMKYTMFGKYL 342


>SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2)
          Length = 175

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 16/36 (44%), Positives = 25/36 (69%)
 Frame = +3

Query: 84  HVVFGKVLEGMDVVQKIEMTVTGANDRPVKDVVISD 191
           HVVFG V++G ++V++IE   T   +RP  DV +S+
Sbjct: 3   HVVFGHVIQGEELVRQIESLPTNEKNRPNADVKVSN 38


>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 35.1 bits (77), Expect = 0.024
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = +3

Query: 21  KDTNGSQFFITTVKTPWLDGR-----HVVFGKVLEGMDVVQKIEMTVT 149
           +D+  SQFFI      +LD       + VFGKV++GMDVV KI    T
Sbjct: 115 RDSATSQFFINHKDNAFLDHGSRDFGYAVFGKVVKGMDVVDKIAQVPT 162


>SB_20549| Best HMM Match : Acyltransferase (HMM E-Value=1.8e-27)
          Length = 649

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = -2

Query: 369 YLLQKIFSSLFISIVINKNHIE 304
           YLL+KI +SLF  +++NK+ +E
Sbjct: 93  YLLRKILTSLFRKVMVNKSGLE 114


>SB_39340| Best HMM Match : DUF1656 (HMM E-Value=2.9)
          Length = 225

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 232 FVTLKGSATTSVFVSDIT-TSLTGRSFAP-VTVISIFCTTSIPSKTLPKTTCL 80
           ++TL  S T    V  IT  S+T     P +T+ S+ C T +P  TL   TC+
Sbjct: 74  YITL-ASVTCFTGVPHITLASVTCVKGVPYITLASVTCVTGVPYITLTSVTCV 125



 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -1

Query: 148 VTVISIFCTTSIPSKTLPKTTCLPSNQGVLTVVMKN*DPFVSLPALAI 5
           +T+  + C T +P  TL   TC+    GVL + + +   F  +P + +
Sbjct: 47  ITLALVTCVTGVPYITLASVTCV---TGVLYITLASVTCFTGVPHITL 91


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 181  TTSLTGRSFAPVTVISIFCTTSIP-SKTLPKTTCLPSNQGV 62
            TTS+   + AP T  S+  TT+ P + TLPKTT  P    V
Sbjct: 2835 TTSVPKTTAAPETT-SVPKTTAAPETTTLPKTTAAPETTSV 2874



 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 181  TTSLTGRSFAPVTVISIFCTTSIPSKTLPKTTCLPSNQGV 62
            TT+L   + AP T      T +  + TLPKTT  P    V
Sbjct: 3003 TTTLPKTTAAPETTTLPKTTAAPETTTLPKTTAAPETTAV 3042


>SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)
          Length = 1498

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -1

Query: 208  TTSVFVSDITTSLTGRSFAPVTVISIFCTTS 116
            TTS++++ +  ++ G S+A V +  ++C  S
Sbjct: 1320 TTSIYIAAVAVTVLGCSYAAVPLYRLYCQAS 1350


>SB_45173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 229 VTLKGSATTSVFVSDITTSLTGRSFAPVTVISIFCTTSI 113
           +T+  + TTS+ +  I T  T  S   + +I+I  TTSI
Sbjct: 206 ITITITTTTSITIIIIITITTTTSITIIIIITITTTTSI 244



 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 229 VTLKGSATTSVFVSDITTSLTGRSFAPVTVISIFCTTSI 113
           +T+  + TTS+ +  I T  T  S   + +I+I  TTSI
Sbjct: 260 ITITITTTTSITIIIIITITTTTSITIIIIITITTTTSI 298


>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
          Length = 531

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -1

Query: 214 SATTSVFVSDITTSLTGRSFAPVTVISIFCTTSIPSKTLPKTTCLPSN 71
           +A T+       T+LT  + AP T  +   TT+  + T P TT  P+N
Sbjct: 22  TAPTTTTAPTTNTALTTTT-APTTTTAPTTTTAPTTTTAPTTTTTPNN 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,753,434
Number of Sequences: 59808
Number of extensions: 197563
Number of successful extensions: 587
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)