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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H08f
         (344 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.8  
SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)                28   1.8  
SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)                27   3.1  
SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)                      27   3.1  
SB_34877| Best HMM Match : Methyltransf_2 (HMM E-Value=0.00017)        27   4.1  
SB_38395| Best HMM Match : TAFII28 (HMM E-Value=2.9)                   27   5.4  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_148| Best HMM Match : PRKCSH (HMM E-Value=2.4)                      26   7.1  
SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     26   9.4  
SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24)                 26   9.4  
SB_25409| Best HMM Match : PSD1 (HMM E-Value=7.2)                      26   9.4  
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)                 26   9.4  
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)                       26   9.4  

>SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 23  TKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTC 127
           T+  GIT    T Y +S +K+V +   T+ A  TC
Sbjct: 19  TRWSGITCMMSTHYSSSYKKLVPRQLTTRWASITC 53


>SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)
          Length = 351

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 65  GASLRKMVKKMEVTQHAKYTCSFCGK 142
           G   +K ++  E++ H KY CS CGK
Sbjct: 210 GGVTKKQIQSNEIS-HKKYVCSTCGK 234


>SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 4   YQNGQTYQKGWNYWQIWHTLRCL 72
           YQ     + GW  WQIW  LR +
Sbjct: 646 YQGRPLMKYGWLKWQIWRALRLI 668


>SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 604

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 144 SLPQNEQVYFACWVTSIFLTIL 79
           S P +  V FA W  SIFLTI+
Sbjct: 133 SAPTSLSVIFAAWFLSIFLTII 154


>SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
          Length = 300

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 127 LILW*GCYETFL-CRHLVL*AMQEDCSRRSLGILHYCCLIMQICCQEV 267
           ++L  GCY   L C H+V   M   C    + +L   C++M ICC +V
Sbjct: 127 VVLSLGCYVVMLLCHHVV---MSLSCY---IDMLLCRCVVMSICCYDV 168


>SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 162 QERFIASLPQNEQVYFACWVTSIFLTILRRE 70
           +++  AS  + E  ++ CWV S F+T  + +
Sbjct: 167 RKKIAASCWEKESEFYECWVASFFITTAKTQ 197


>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
          Length = 298

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 122 TCSFCGKDAMKRS 160
           TC+FCGKDA K S
Sbjct: 243 TCNFCGKDARKTS 255


>SB_34877| Best HMM Match : Methyltransf_2 (HMM E-Value=0.00017)
          Length = 893

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = -3

Query: 252 DLHDEAAVVENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTSIFLT 85
           D H    V EN +    T    RL D +   +  +  +  +  VYF       FLT
Sbjct: 670 DKHSAEHVAENVKPSCKTGSTRRLLDTLVAMQLLVKEMDSDPPVYFNSQTAEAFLT 725


>SB_38395| Best HMM Match : TAFII28 (HMM E-Value=2.9)
          Length = 292

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 261 LTADLHDEAAVVENTQAP 208
           +TADLHD A VV N + P
Sbjct: 247 ITADLHDTARVVVNLRTP 264


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 261  LTADLHDEAAVVENTQAP 208
            +TADLHD A VV N + P
Sbjct: 972  ITADLHDTARVVVNLRTP 989


>SB_148| Best HMM Match : PRKCSH (HMM E-Value=2.4)
          Length = 438

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -1

Query: 215 KLLLLQSSCIAYKTRCRHKNVS*HPYHKMSKYTLRVGL 102
           +++ LQS    YK  C  KNV  HP      Y LR+GL
Sbjct: 110 RVVTLQSDSYPYK--CYIKNVLSHPQESQESY-LRLGL 144


>SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 618

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 77  RKMVKKMEVTQHAKYTCSFCGKDAMKRS 160
           R+ VK + + +  KY C  C KD  + S
Sbjct: 410 REQVKDLFIKEGEKYRCRLCSKDFTRLS 437


>SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24)
          Length = 1423

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -3

Query: 252  DLHDEAAVVENTQAPPATVLLHRLQDQMPTQ 160
            ++H+  +   +  +PPA+V+ H+L++   TQ
Sbjct: 1386 EIHEVMSQCFDENSPPASVIRHKLEELYSTQ 1416


>SB_25409| Best HMM Match : PSD1 (HMM E-Value=7.2)
          Length = 889

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -3

Query: 249 LHDEAAVV--ENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVY 118
           LHD AA V   + + P  T+ LH     +PT  R +   P+    Y
Sbjct: 409 LHDAAASVYTASNEPPEFTIELHHELGYLPTYPRKVTIRPRKVPTY 454


>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
          Length = 1399

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 128  SFCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVRRL 268
            S C KDA  ++ VG ++C RCK    G  +       S+CR   +RL
Sbjct: 911  SACHKDAACQNTVGSYAC-RCKEGYEGDGY-------SNCRVEKKRL 949


>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
          Length = 960

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +2

Query: 131 FCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSC 247
           +C        C+  W+ KRC +    G + F+ T   +C
Sbjct: 594 YCDHVTGSCECLPGWTGKRCDQACPSGTYGFNCTLPCAC 632


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,829,895
Number of Sequences: 59808
Number of extensions: 208091
Number of successful extensions: 543
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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