Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301F07f
(323 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14331| Best HMM Match : SAG (HMM E-Value=5.7) 40 5e-04
SB_4861| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0063) 29 0.66
SB_785| Best HMM Match : hATC (HMM E-Value=0.13) 29 1.1
SB_32075| Best HMM Match : LIM (HMM E-Value=0.44) 28 1.5
SB_9355| Best HMM Match : rve (HMM E-Value=4.8e-35) 27 3.5
SB_58341| Best HMM Match : Ribosomal_60s (HMM E-Value=8.4) 26 6.1
SB_51948| Best HMM Match : Cation_efflux (HMM E-Value=0.58) 26 6.1
SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71) 26 6.1
SB_33945| Best HMM Match : Rubella_Capsid (HMM E-Value=2.4) 26 6.1
SB_28763| Best HMM Match : Melittin (HMM E-Value=5.4) 26 8.1
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.1
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.1
>SB_14331| Best HMM Match : SAG (HMM E-Value=5.7)
Length = 141
Score = 39.9 bits (89), Expect = 5e-04
Identities = 23/80 (28%), Positives = 38/80 (47%)
Frame = +2
Query: 77 KYPWYHQNYRRVPTIDQCYDDDVVCDFEANAQFKRDRAVDSEILSILRQRYEDCMMYEQP 256
KY + R P+ ++ D V EA Q+ DR V+ E + LR + C E+
Sbjct: 4 KYFKRYTEKARAPSFEEIDRRDPVAFSEAREQWVLDRLVELETVKELRDQVAHCYRQEEV 63
Query: 257 DHATKCRSLWDKYKSAEEAW 316
+ CR++ D+Y A +A+
Sbjct: 64 NARQNCRTIVDQYMQAFKAY 83
>SB_4861| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0063)
Length = 773
Score = 29.5 bits (63), Expect = 0.66
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +2
Query: 35 VTWFRETVVEPNQKKYPWYHQNYRRVPTIDQCYDDDVVCDFEANAQFKRDRAVDSEI 205
+ W+++ + N + W + PT++Q +D VV DFE+ ++ R EI
Sbjct: 216 MAWWQQFLESWNSVSF-WLYPGLEATPTVEQPFDYLVVIDFESTCWKEKRRNSAPEI 271
>SB_785| Best HMM Match : hATC (HMM E-Value=0.13)
Length = 205
Score = 28.7 bits (61), Expect = 1.1
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +2
Query: 11 LYNTVDAPVTWFRETVVEPNQKKYPWYHQNYRRVP 115
LYNTV + + ++ ++K W+H + ++P
Sbjct: 118 LYNTVPGCEVYVSDVLINTEERKVKWWHDHKEQLP 152
>SB_32075| Best HMM Match : LIM (HMM E-Value=0.44)
Length = 789
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 1 LQCSLQYSRCSGNMVPRNCCRTKP 72
L C+ ++ RC ++ RNC R KP
Sbjct: 764 LSCNRRHKRCHASVTLRNCERVKP 787
>SB_9355| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1520
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 149 CDFEANAQ-FKRDRAVDSEILSILRQRYEDCMMYEQPDHATKCR 277
C+F + + RDR V S LS + ++C + H +KCR
Sbjct: 400 CNFGGSLENMLRDRLVSSSPLSRSKSENKECYRCGKNHHPSKCR 443
>SB_58341| Best HMM Match : Ribosomal_60s (HMM E-Value=8.4)
Length = 153
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 134 DDDVVCDFEANAQFKRDRAVDSEILSILRQRYEDCMMYEQPDHATKCRSLWDKYKS 301
DDD D + N + D D +L Y+D Y++ D + R WD ++S
Sbjct: 62 DDDDDDDDDDNDDDEVDDDDDDVEDDVLDDDYDDYDEYDEYDEYDRVRVEWDSFES 117
>SB_51948| Best HMM Match : Cation_efflux (HMM E-Value=0.58)
Length = 262
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -2
Query: 109 TTVVLMIPRVLLLVWF 62
TTVVL++ VL+LVWF
Sbjct: 145 TTVVLILMYVLVLVWF 160
>SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)
Length = 1139
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -1
Query: 107 DGSFDDTKGTSSGLVRQQFLGTMLPEHRLYCR 12
D S TSSG VRQ L PE RL R
Sbjct: 92 DASSPGHSWTSSGSVRQNLLSQFQPESRLLGR 123
>SB_33945| Best HMM Match : Rubella_Capsid (HMM E-Value=2.4)
Length = 323
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 26 DAPVTWFRETVVEPNQKKYPWYHQNYRRVPTIDQCYDDDVVCDFEAN 166
DAPV RET + P + + P + R I Q D D V D ++N
Sbjct: 32 DAPV---RETNITPREDRTPQFRGRKRARTRITQTNDSD-VSDIQSN 74
>SB_28763| Best HMM Match : Melittin (HMM E-Value=5.4)
Length = 260
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 23 VDAPVTWFRETVVEPNQKKYPWYHQNYRRVP 115
+ A +TW +E EP K+ P + Q+Y P
Sbjct: 217 IPAIMTWIKERK-EPKNKQLPQFEQDYNLQP 246
>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3292
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 22 SRCSGNMVPRNCCRTKPEEVPLVS 93
SRC N V R+ C KP E+P V+
Sbjct: 1374 SRCEAN-VTRDFCPLKPRELPKVN 1396
>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 11 LYNTVDAPVTWFRETVVEPNQKK 79
+YNTV+ P T F+ TV+ P K
Sbjct: 1921 VYNTVENPHTKFQATVITPEIAK 1943
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,304,777
Number of Sequences: 59808
Number of extensions: 161459
Number of successful extensions: 479
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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