Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F05f
         (384 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56700| Best HMM Match : rve (HMM E-Value=1.1e-11)                   27   4.0  
SB_51764| Best HMM Match : Pox_A32 (HMM E-Value=0.025)                 27   6.9  
SB_9092| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)                  27   6.9  
SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)              26   9.2  
SB_6548| Best HMM Match : Helicase_C (HMM E-Value=0.003)               26   9.2  
SB_4355| Best HMM Match : DUF1421 (HMM E-Value=6.6)                    26   9.2  

>SB_56700| Best HMM Match : rve (HMM E-Value=1.1e-11)
          Length = 1140

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 39  SLYADEGTAFNEILAEHLYNDVIIADYDSAVERSKLIYTDNK 164
           SL  D G  +   L+E L   + +A  D  +   K +Y D K
Sbjct: 455 SLLTDHGVLYPRALSEALLFKITLATVDQGLATKKFVYPDIK 496


>SB_51764| Best HMM Match : Pox_A32 (HMM E-Value=0.025)
          Length = 812

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 20/71 (28%), Positives = 36/71 (50%)
 Frame = +3

Query: 48  ADEGTAFNEILAEHLYNDVIIADYDSAVERSKLIYTDNKGELITNVVNNLIRNNKMNCME 227
           AD GTA  +  ++H   +V  AD   +VE +   + + K  L+ ++ NNL +N   +   
Sbjct: 718 ADTGTASADARSQH---EVAAAD---SVEPAIPEWRNLKEVLVPSLTNNLPKNLANDIKN 771

Query: 228 YAYQLWMQGSE 260
              +LW+ G +
Sbjct: 772 LHVRLWLPGRQ 782


>SB_9092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 288 QPGNNPGRCPRSLASRAGRRTPCSSSCCFVS 196
           +P  NPG  P+ + S  G   P   +C F+S
Sbjct: 391 KPVINPGGSPKEIFSYVGNTQPVRINCDFIS 421


>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
          Length = 300

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 20/71 (28%), Positives = 36/71 (50%)
 Frame = +3

Query: 48  ADEGTAFNEILAEHLYNDVIIADYDSAVERSKLIYTDNKGELITNVVNNLIRNNKMNCME 227
           AD GTA  +  ++H   +V  AD   +VE +   + + K  L+ ++ NNL +N   +   
Sbjct: 108 ADTGTASADARSQH---EVAAAD---SVEPAIPEWRNLKEVLVPSLTNNLPKNLANDIKN 161

Query: 228 YAYQLWMQGSE 260
              +LW+ G +
Sbjct: 162 LHVRLWLPGRQ 172


>SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 195 LIRNNKMNCMEYAYQLWMQGSEDIVRDCF 281
           L  NN+M    +A+  W++G +   R C+
Sbjct: 18  LHNNNRMLICTFAHSTWLKGRQGSSRQCY 46


>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
          Length = 2007

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/55 (25%), Positives = 29/55 (52%)
 Frame = +3

Query: 150  YTDNKGELITNVVNNLIRNNKMNCMEYAYQLWMQGSEDIVRDCFPVEFTLILAEN 314
            + D+K EL T + +  + N+K   ++ + + W +   ++VRD +    T+   EN
Sbjct: 941  FADDKEEL-TQLASMALANSKQLIIDKSLKGWKEIEYEVVRDAYDNCITVCNMEN 994


>SB_6548| Best HMM Match : Helicase_C (HMM E-Value=0.003)
          Length = 1063

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 285 PGNNPGRCPRSLASRAGRRTPCSSSCCFVSD 193
           PGN+P R PR  + R  RR+     C  + D
Sbjct: 622 PGNSPARSPRRKSLRHKRRSISQRPCPDIVD 652


>SB_4355| Best HMM Match : DUF1421 (HMM E-Value=6.6)
          Length = 642

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 285 PGNNPGRCPRSLASRAGRRTPCSSSCCFVSD 193
           PGN+P R PR  + R  RR+     C  + D
Sbjct: 477 PGNSPARSPRRKSLRHKRRSISQRPCPDIVD 507


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,070,296
Number of Sequences: 59808
Number of extensions: 200237
Number of successful extensions: 579
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)