Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301E11f
         (353 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.27 
SB_21661| Best HMM Match : EGF_CA (HMM E-Value=0)                      27   4.4  
SB_14910| Best HMM Match : RVT_1 (HMM E-Value=0.47)                    27   4.4  
SB_26868| Best HMM Match : RLI (HMM E-Value=8.5)                       27   4.4  

>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1288

 Score = 31.1 bits (67), Expect = 0.27
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -2

Query: 244 HTML*KRIHTVRYKMSLLCWFMTHSDAITELHLLKLIDKHRRHFSSM*IKITPTA 80
           +T + + +  +R K S +  + THSD ITE+ + K      +  S + IK+ P A
Sbjct: 178 NTKILEELVVLRKKRSDILGYATHSDYITEMRMSKSAANVSKFLSDLAIKLHPLA 232


>SB_21661| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1202

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = -3

Query: 309 NPTRPL*IRALLCSVNHNCESSTQCYRNVFTLCAIKCHCYVGL*LTRMRSLSYIY*S*LI 130
           N   PL I +    + HNC S   C     T  +  C C+VG     +   +Y+    ++
Sbjct: 583 NECHPLGISSRYKHLAHNCHSDANCTN---TKGSFYCTCHVGYSGDGVVCAAYLLGINIL 639

Query: 129 NTDAILVP 106
              AIL P
Sbjct: 640 RITAILTP 647


>SB_14910| Best HMM Match : RVT_1 (HMM E-Value=0.47)
          Length = 193

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 280 IIVLRKSQLRVFHT-ML*KRIHTVRYKMSLLCWFMTH 173
           I++L +  L+V H  +L K  H+     SLLCWF ++
Sbjct: 32  IVLLIRLCLKVDHAALLYKLEHSFGISCSLLCWFQSY 68


>SB_26868| Best HMM Match : RLI (HMM E-Value=8.5)
          Length = 129

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 341 HSQRTLSDPTRTQHDHFKFAHY 276
           H + T  DP RT+H   K A Y
Sbjct: 91  HFEGTFDDPERTKHSRIKLAKY 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,589,130
Number of Sequences: 59808
Number of extensions: 183894
Number of successful extensions: 349
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)