Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301E07f
         (447 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24924| Best HMM Match : WHEP-TRS (HMM E-Value=1.1)                  28   3.1  
SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)                 28   4.0  
SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   5.3  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_7343| Best HMM Match : EGF (HMM E-Value=0)                          27   9.3  

>SB_24924| Best HMM Match : WHEP-TRS (HMM E-Value=1.1)
          Length = 1002

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 17/54 (31%), Positives = 20/54 (37%)
 Frame = -1

Query: 273 HVSLYHLRNWRINSPGARSSRGANYGLISRCLCHFCGSRRFCCFGSLCRRLSGI 112
           H++L+     RI S        A      RCLC  CG     C G    RL  I
Sbjct: 671 HITLHANTRRRICSRSGHKGTSACSSFYYRCLCEDCGKPYSTCDGLPSSRLHDI 724


>SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)
          Length = 2376

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
 Frame = +2

Query: 275  QTDSAFAQPTPHALLPKTIQKCTRTF--TDALALIPTRSKFLYADNLLHRYRIACSXIQ 445
            Q     A P PH L    IQ    TF  TDA+  +P+       +   +RY   C+  Q
Sbjct: 1888 QYSRPLAVPMPHYLYQAPIQPVFTTFGGTDAILFVPSADPTSIHNLWRYRYHTICTKRQ 1946


>SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1239

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
 Frame = -1

Query: 357  SVNVRVHFCIVFGNSACGVG*ANAESVCHVSLYH--LRNWRINSPGARSSRGANYGLISR 184
            +V+VR H   VF    CG    ++ S+    L H   R +R   P    S G    L   
Sbjct: 1129 AVHVRTHSDKVFQCDQCGKSFRHSRSLARHELLHSGQRPYRCTEPECEQSFGRQDHLTDH 1188

Query: 183  CLCHFCGSRRFCC 145
               H  G R F C
Sbjct: 1189 LRTH-TGERPFQC 1200


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 249 NWRINSPGARSSRGANYGLISRCLCHFCGSRRFCCF 142
           NW+   P  + + G + GL +   C  CGS +FC +
Sbjct: 452 NWK---PCLKGTYGDSAGLANITSCRPCGSGKFCAY 484


>SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 118 RYLLLGACPWEHWQPRKHKPP 56
           +Y L G C +    PRKHK P
Sbjct: 340 KYRLPGGCGYNDHDPRKHKKP 360


>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1233

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
 Frame = -1

Query: 171  FCGSRRF-------CCFGSLCRRLSGICYLEPVLGNIG 79
            +CGSR         C FGS CR   G+   +  LG  G
Sbjct: 1000 YCGSRSIPCLDYNPCAFGSTCREKQGVVTCDCPLGRTG 1037


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,328,983
Number of Sequences: 59808
Number of extensions: 221626
Number of successful extensions: 712
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)