Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D12f
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23876| Best HMM Match : PCNA_C (HMM E-Value=0)                     136   1e-32
SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0)                        34   0.060
SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.060
SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.24 
SB_2748| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7e-08)          32   0.24 
SB_17643| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00047)         31   0.74 
SB_36449| Best HMM Match : RnaseH (HMM E-Value=0.92)                   29   2.3  
SB_45487| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_50927| Best HMM Match : DEAD (HMM E-Value=3.2e-06)                  27   6.9  
SB_21088| Best HMM Match : PLAT (HMM E-Value=1.7e-18)                  27   6.9  
SB_25| Best HMM Match : No HMM Matches (HMM E-Value=.)                 27   9.2  
SB_33734| Best HMM Match : ELMO_CED12 (HMM E-Value=4.4e-33)            27   9.2  
SB_23489| Best HMM Match : DUF1393 (HMM E-Value=0.56)                  27   9.2  

>SB_23876| Best HMM Match : PCNA_C (HMM E-Value=0)
          Length = 225

 Score =  136 bits (328), Expect = 1e-32
 Identities = 59/94 (62%), Positives = 75/94 (79%)
 Frame = +2

Query: 230 MDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNV 409
           MD+SHV LVS+ L ADGFD YRCDR +S+GM    +SKI+KCAG++D +TI A+D  D V
Sbjct: 1   MDSSHVCLVSVQLNADGFDPYRCDRTLSIGMKTSLLSKIIKCAGNEDRITIHAEDTGDTV 60

Query: 410 TFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEY 511
           TF FESPN+EK S+Y+MKLM++D EHLGIP+  Y
Sbjct: 61  TFSFESPNEEKTSEYKMKLMDIDSEHLGIPDQTY 94


>SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1623

 Score = 34.3 bits (75), Expect = 0.060
 Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 2/127 (1%)
 Frame = +2

Query: 92  VIH*NINMFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLR 271
           +IH NIN  + +L    +L K L +    LT+   D      QL A++  H+        
Sbjct: 220 LIHLNINSCQNKLDELLLLNKELRSHVIFLTETKIDSSYTNAQL-ALEGYHIYRKDRKKG 278

Query: 272 ADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFV--FESPNQEKV 445
             G   Y   +  S  + L    K+L      + + I A  N +NV FV  + SPN    
Sbjct: 279 GGGLMAYFSSKMASRKVKLPKQYKLL------EVLAINAIINNNNVLFVGIYRSPNPTG- 331

Query: 446 SDYEMKL 466
           +DY  KL
Sbjct: 332 TDYYRKL 338


>SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 34.3 bits (75), Expect = 0.060
 Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 2/127 (1%)
 Frame = +2

Query: 92   VIH*NINMFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLR 271
            +IH NIN  + +L    +L K L +    LT+   D      QL A++  H+        
Sbjct: 868  LIHLNINSCQNKLDELLLLNKELRSHVIFLTETKIDSSYTNAQL-ALEGYHIYRKDRKKG 926

Query: 272  ADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFV--FESPNQEKV 445
              G   Y   +  S  + L    K+L      + + I A  N +NV FV  + SPN    
Sbjct: 927  GGGLMAYFSSKMASCKVKLPKQYKLL------EVLAINAIINNNNVLFVGIYRSPNPTG- 979

Query: 446  SDYEMKL 466
            +DY  KL
Sbjct: 980  TDYYRKL 986


>SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1800

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 2/127 (1%)
 Frame = +2

Query: 92   VIH*NINMFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLR 271
            +IH NIN  + +L    +L K L +    LT+   D      QL A++  H+        
Sbjct: 1125 LIHLNINSCQNKLDELLLLNKELRSHVIFLTETKIDSSYTNAQL-ALEGYHIYRKDRKKG 1183

Query: 272  ADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFV--FESPNQEKV 445
              G   Y   +  S  + L    K L      + + I A  N +NV FV  + SPN    
Sbjct: 1184 GGGLMAYFSSKMASRKVKLPKQYKWL------EVLAINAIINNNNVLFVGIYRSPNPTG- 1236

Query: 446  SDYEMKL 466
            +DY  KL
Sbjct: 1237 TDYYRKL 1243


>SB_2748| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7e-08)
          Length = 438

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 2/127 (1%)
 Frame = +2

Query: 92  VIH*NINMFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLR 271
           +IH NIN  + +L    +L K L +    LT+   D      QL A++  H+        
Sbjct: 220 LIHLNINSCQNKLDELLLLNKELRSHVIFLTETKIDSSYTNDQL-ALEGYHIYRKDRKKG 278

Query: 272 ADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFV--FESPNQEKV 445
             G   Y   +  S  + L    ++L      + + I A  N +NV FV  + SPN    
Sbjct: 279 GGGLMAYFSSKMASRKVKLPKQYRLL------EVLAINAIINNNNVLFVGIYRSPNPTG- 331

Query: 446 SDYEMKL 466
           +DY  KL
Sbjct: 332 TDYYRKL 338


>SB_17643| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00047)
          Length = 305

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 2/127 (1%)
 Frame = +2

Query: 92  VIH*NINMFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLR 271
           +IH NIN  + +L    +L K L +    LT+   D      QL A++  H+        
Sbjct: 94  LIHLNINSCQNKLDELLLLNKELRSHVIFLTETKIDSSYTNAQL-ALEGYHIYRKDRKKG 152

Query: 272 ADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFV--FESPNQEKV 445
             G       +  S  + L    K+L      + + I A  N +NV FV  + SPN    
Sbjct: 153 GGGLMANFSSKMASRKVKLPKQYKLL------EVLAINAIINNNNVLFVGIYRSPNPTG- 205

Query: 446 SDYEMKL 466
           +DY  KL
Sbjct: 206 TDYYCKL 212


>SB_36449| Best HMM Match : RnaseH (HMM E-Value=0.92)
          Length = 655

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
 Frame = +2

Query: 86  IEVIH*NINMFEARLLRSSILKKVLEAIKDLLTQA-TFDCDDNGIQLQAMDNSHVSLVSL 262
           ++VI    N  + + L    L+ +LEA+K+LL Q+ +F C+++ ++L  ++  H+S  SL
Sbjct: 14  LQVIQAITNYLDKKELEVDKLQAILEAVKNLLNQSLSFLCEES-LRL-PINKDHLSFSSL 71


>SB_45487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1236

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
 Frame = +2

Query: 275 DGFDKYRCD---RNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKV 445
           D F +Y C    +N  +  +    S+I + + + + + + A +N +      +SPN +KV
Sbjct: 158 DNFYEYACGSWVKNNDVPPSHLQYSRISELSNNNEKILMHALNNTEPN----DSPNIKKV 213

Query: 446 SDYEMKLMNLD-LEHLG 493
             +    MN+D ++HLG
Sbjct: 214 KTFFQSCMNVDAIDHLG 230



 Score = 27.1 bits (57), Expect = 9.2
 Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = +2

Query: 275  DGFDKYRCD---RNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKV 445
            D F +Y C    +N  +       S+I + + + + + + A +N +      +SPN +K+
Sbjct: 800  DNFYEYACGSWVKNNDIPKFHSQYSRISELSNNNEKILMHALNNTEPN----DSPNIKKI 855

Query: 446  SDYEMKLMNLD-LEHLG 493
              +    MN+D ++H+G
Sbjct: 856  KTFFQSCMNVDAIDHMG 872


>SB_50927| Best HMM Match : DEAD (HMM E-Value=3.2e-06)
          Length = 368

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = -1

Query: 210 LSSQSKVACVSRSLIASKTFFKIELRSKRASNMFIF*CITSIILLKINNNAKQAATPNL 34
           +S   +VA      +     FK+ L SK++S+  +  C T I+L    +++  A   ++
Sbjct: 38  MSVAERVAAERAEKLGDSVGFKVRLESKQSSSTRLLYCTTGILLRYFESDSTLAGVSHV 96


>SB_21088| Best HMM Match : PLAT (HMM E-Value=1.7e-18)
          Length = 240

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 290 YRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 424
           + CDR +++  + G + ++L  + DKD  T K   N    T +F+
Sbjct: 112 FMCDRWLALEKDDGMVDRVLLVSTDKDLKTFKTLFNTKVSTDLFD 156


>SB_25| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 627

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 359 GDKDTVTIKAQDNADNVTFVFESPNQ 436
           G+ DT+T+K QDN D+     E P +
Sbjct: 434 GNYDTLTLKLQDNLDHYEKYSEKPKE 459


>SB_33734| Best HMM Match : ELMO_CED12 (HMM E-Value=4.4e-33)
          Length = 535

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 437 EKVSDYEMKLMNLDLEHLGIPET 505
           E + + EMKL  LDLE++ IPE+
Sbjct: 496 ETLLNMEMKLRLLDLENISIPES 518


>SB_23489| Best HMM Match : DUF1393 (HMM E-Value=0.56)
          Length = 223

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 140 SFGVNVPQTCLYFNVSLQ*FC*KL 69
           S+G N+P  C++ N+S+  F  K+
Sbjct: 42  SYGCNIPLVCIFLNISIGTFAQKV 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,680,676
Number of Sequences: 59808
Number of extensions: 282356
Number of successful extensions: 624
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)