Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D11f
         (502 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50949| Best HMM Match : AMP-binding (HMM E-Value=0)                 28   3.8  
SB_12792| Best HMM Match : Pkinase (HMM E-Value=1.1e-09)               28   3.8  
SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08)               28   3.8  
SB_35733| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.058)          27   6.6  

>SB_50949| Best HMM Match : AMP-binding (HMM E-Value=0)
          Length = 569

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = -3

Query: 443 EMVCSDMKWFLTVTRH--MPRYNKMHNYSILL 354
           E++ S++K FL +  H  MP + K+H+Y  LL
Sbjct: 136 EVLDSEIKIFLCIGSHDNMPNHKKVHSYDALL 167


>SB_12792| Best HMM Match : Pkinase (HMM E-Value=1.1e-09)
          Length = 196

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 405 YSKKPFHITTNHFMKLKCVILP 470
           Y + PF   TN  MKL+C+I P
Sbjct: 156 YGRTPFQHITNQAMKLQCIIDP 177


>SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08)
          Length = 857

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 405 YSKKPFHITTNHFMKLKCVILP 470
           Y + PF   TN  MKL+C+I P
Sbjct: 692 YGRTPFQHITNQAMKLQCIIDP 713


>SB_35733| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.058)
          Length = 448

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 416 TISYHYKPFHETKMCHS 466
           T+SYH  P H T+ CH+
Sbjct: 346 TVSYHTIPCHTTRTCHT 362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,370,260
Number of Sequences: 59808
Number of extensions: 207799
Number of successful extensions: 307
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)