Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301D08f
(386 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14345| Best HMM Match : GFO_IDH_MocA (HMM E-Value=3.9e-09) 58 3e-09
SB_3096| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_58376| Best HMM Match : M20_dimer (HMM E-Value=0.00027) 29 1.8
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 28 3.1
SB_5720| Best HMM Match : DUF528 (HMM E-Value=1.6) 27 4.0
SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19) 27 5.3
SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07) 27 7.1
SB_20774| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3
>SB_14345| Best HMM Match : GFO_IDH_MocA (HMM E-Value=3.9e-09)
Length = 408
Score = 58.0 bits (134), Expect = 3e-09
Identities = 27/66 (40%), Positives = 41/66 (62%)
Frame = +2
Query: 188 MLPGIGVFGTGAIAKVLVPFLKEKGFSVEAIWGITLQEAEIAAKELKIPFFTNKIDDVLL 367
MLP +GV TG L+ LK GF+V ++WG T +A+ A I + T+KID++LL
Sbjct: 1 MLPSVGVVDTGESCGELISALKAAGFTVSSLWGCTQHQAKTMAHRYDIGYSTSKIDELLL 60
Query: 368 KKNVSL 385
+++V L
Sbjct: 61 REDVDL 66
>SB_3096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 994
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = -2
Query: 379 HILLEKDVVNFVCEERNFKFFCGYLCFLQSYT---PYCFN 269
H+L V+ + E FCG LQ YT P+CF+
Sbjct: 927 HVLTVDHVLGMIAEAEKKCTFCGTQLMLQGYTKSHPHCFS 966
>SB_58376| Best HMM Match : M20_dimer (HMM E-Value=0.00027)
Length = 517
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +2
Query: 230 KVLVPFLKEKGFSVEAIWGITLQEAEIA 313
KVL FL+EKGF V W TL+ A +A
Sbjct: 180 KVLTDFLEEKGFDVTRSW--TLETAFVA 205
Score = 27.5 bits (58), Expect = 4.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 230 KVLVPFLKEKGFSVEAIWGI 289
KVL FL+EKGF V W +
Sbjct: 84 KVLTDFLEEKGFDVTRSWAL 103
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -3
Query: 360 TSSILFVKKGILSSFAAISASCKVIPHIASTENPFSFKKGTRTLAIAPVPKTP 202
T S V + I ++ A+ + ST PF+F T T AI+ TP
Sbjct: 2237 TGSSTSVPQSIATAPFVFGAATTTAEALTSTSTPFAFGAATTTAAISTSTSTP 2289
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -3
Query: 276 ASTENPFSFKKGTRTLAIAPVPKTPIPGNIVLT 178
A+ PFSF G + A A V T IPGN T
Sbjct: 2153 AAKPAPFSFGAGVSSTAGAGVASTGIPGNAAPT 2185
>SB_5720| Best HMM Match : DUF528 (HMM E-Value=1.6)
Length = 151
Score = 27.5 bits (58), Expect = 4.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 230 KVLVPFLKEKGFSVEAIWGI 289
KVL FL+EKGF V W +
Sbjct: 84 KVLTDFLEEKGFDVTRSWAL 103
>SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)
Length = 648
Score = 27.1 bits (57), Expect = 5.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 10 CLDLSSETICRILFHSNF*IENESHLE*EFRTITF 114
C ++SE +C I H IEN LE RTI +
Sbjct: 461 CTGMTSEGVCLIHLHPGSTIENRVVLEYRARTIGY 495
>SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1293
Score = 27.1 bits (57), Expect = 5.3
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -3
Query: 339 KKGILSSFAAISASCKVIPHIASTENPFSFKKGTRTLAIAPVPKTPIPGNIV 184
K G+L + + + K +P A +P+S T +P+ TP P +
Sbjct: 1104 KDGMLKTSKILMENYKAVPKSAQAPSPYSSSTTKMTGTPSPMSPTPSPSGSI 1155
>SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 395
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 310 YLCFLQSYTPYCFNRKSFLFQERHQNFSN 224
+ CF + + F S LFQ H+N +N
Sbjct: 23 FACFREVFHRNFFRSHSLLFQSHHENMNN 51
>SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07)
Length = 534
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -3
Query: 306 SASCKVIPHIASTENPFSFKKGTRTLAIAPVPKTPIPGNIVLTLF 172
S CK++ HI S + K + T + VP+ + G ++ LF
Sbjct: 412 SVICKILEHIVSQSVCVNGAKSSWTRVTSGVPQGTVLGPVLFNLF 456
>SB_20774| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 26.2 bits (55), Expect = 9.3
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -2
Query: 307 LCFLQSYTPYCFNRKSFLFQERHQNFSNRSCSKNP 203
L FLQS NR+S LF+ H N NR K P
Sbjct: 85 LVFLQSSRIRTLNRRSRLFELHHTN-QNRRDVKEP 118
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,636,913
Number of Sequences: 59808
Number of extensions: 194378
Number of successful extensions: 440
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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