Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0129.Seq
         (419 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.6  
SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.7  
SB_18654| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_6424| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.3  

>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 411 PPQARPGQAQPLQAVLLPRAVQVHRTLPPLXLVFPGVI 298
           P  +RP  A P     LP+   V R LP L  VFPG++
Sbjct: 318 PSISRPATAPPPVFRGLPQLPPVFRCLPQLPPVFPGLL 355


>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 848

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -3

Query: 294 QA*TDFYTSLVKENMPLLRKHIRYSLPSP*EYRCLIQLNTTWSIPCSV 151
           Q+   +Y   VKE +     H+ +    P   RC I+LN  WS PC V
Sbjct: 738 QSQKSYYDCWVKEKIFKKGDHVLWFDKKPRRGRC-IKLNRPWSGPCIV 784


>SB_18654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 392

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 265 GQGKYAFASKTYSIFLTISVRISVFNTTKHDLEYSL 158
           G   YA+ +++   FLT      VFN+T  DL+  L
Sbjct: 200 GAANYAWVNRSSMTFLTRQAFAKVFNSTPDDLDMHL 235


>SB_6424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = -3

Query: 417 PIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLXL 316
           P P   RPGQAQ L    L     +HR+L PL L
Sbjct: 40  PGPMARRPGQAQTLGT--LVEDAHMHRSLRPLAL 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,039,117
Number of Sequences: 59808
Number of extensions: 229707
Number of successful extensions: 365
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)