Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0004.Seq
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.60 
SB_15801| Best HMM Match : eRF1_2 (HMM E-Value=4.8)                    27   5.6  
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45)               26   9.8  
SB_2616| Best HMM Match : Na_trans_assoc (HMM E-Value=2.6)             26   9.8  
SB_177| Best HMM Match : SBP_bac_3 (HMM E-Value=0.032)                 26   9.8  

>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 848

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -3

Query: 307 QA*TDFYTSLVKEKYAFARKHIRYSLPSP*EYRCLIQLNTTWSIPCSV 164
           Q+   +Y   VKEK      H+ +    P   RC I+LN  WS PC V
Sbjct: 738 QSQKSYYDCWVKEKIFKKGDHVLWFDKKPRRGRC-IKLNRPWSGPCIV 784


>SB_15801| Best HMM Match : eRF1_2 (HMM E-Value=4.8)
          Length = 562

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 204 KHRYSYGDGKEYRICFRAKAYFSLTRLV 287
           +H +S GD ++  IC  +KAY  L R V
Sbjct: 432 EHEFSLGDAEKEFICATSKAYEELIRNV 459


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 273  RKNMPLLENIFDIPYHLRKNI 211
            ++ +P L+  FDI Y LRKNI
Sbjct: 3328 KRQVPALDKKFDINYILRKNI 3348


>SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45)
          Length = 825

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 171 QGILQVVFSCIKHRYSYGDGKEYRICFR 254
           Q I +  F+CIKH +   D +   +C R
Sbjct: 236 QAIRRYSFTCIKHSFQLSDDRFSELCTR 263


>SB_2616| Best HMM Match : Na_trans_assoc (HMM E-Value=2.6)
          Length = 252

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 324 FQESSFRREQTFTQAWSRKNMPLLENIFDIPYHLRKNI 211
           F  S +++  +  Q   +K   L  NIF IP + RKN+
Sbjct: 180 FYSSLYKKSSSPLQDSFKKKFLLNPNIFKIPEYSRKNV 217


>SB_177| Best HMM Match : SBP_bac_3 (HMM E-Value=0.032)
          Length = 619

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 142 MTSNDFNDNFLFV*L*SAYIKSPGFVPGR 56
           ++ ++FND+F ++   SA I  PG +P R
Sbjct: 113 LSLHNFNDDFTWIFTESAMITDPGGLPNR 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,333,897
Number of Sequences: 59808
Number of extensions: 209199
Number of successful extensions: 323
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)