Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0129
         (403 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.81 
SB_10282| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  

>SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 300

 Score = 29.9 bits (64), Expect = 0.81
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 295 YFTLHINLLCIRVSYFC*IVSDYVSNIIYAVFFVFFLC*RTL 170
           Y  LH+   C+RV Y C  V      ++YA   V + C R L
Sbjct: 163 YACLHVLYACLRVLYACLRVLYACLRVLYACLRVLYACLRLL 204



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 295 YFTLHINLLCIRVSYFC*IVSDYVSNIIYAVFFVFFLC*RTL 170
           Y  LH+   C+ V Y C  V     +++YA   V + C R L
Sbjct: 135 YECLHVLHACLHVLYACLHVLHACLHVLYACLHVLYACLRVL 176



 Score = 28.7 bits (61), Expect = 1.9
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -1

Query: 295 YFTLHINLLCIRVSYFC*IVSDYVSNIIYAVFFVFFLC*RTLVRGC*FIYS*LH 134
           Y  L +   C+R+ Y C  V      ++YA   V + C R L      +Y+ LH
Sbjct: 212 YACLRVLYACLRMLYACLRVLYACLRVLYACLRVLYACLRVLYACLHVLYACLH 265



 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -1

Query: 295 YFTLHINLLCIRVSYFC*IVSDYVSNIIYAVFFVFFLC*RTL 170
           Y  LH+   C+ V Y C  V      ++YA   V + C R L
Sbjct: 149 YACLHVLHACLHVLYACLHVLYACLRVLYACLRVLYACLRVL 190



 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 286 LHINLLCIRVSYFC*IVSDYVSNIIYAVFFVFFLC*RTL 170
           LH+   C+ V Y C  V      ++YA   V + C R L
Sbjct: 159 LHVLYACLHVLYACLRVLYACLRVLYACLRVLYACLRVL 197



 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -1

Query: 295 YFTLHINLLCIRVSYFC*IVSDYVSNIIYAVFFVFFLC*RTL 170
           Y  L +   C+RV Y C  V      ++YA   V + C R L
Sbjct: 177 YACLRVLYACLRVLYACLRVLYACLRLLYACLRVLYACLRVL 218



 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 295 YFTLHINLLCIRVSYFC*IVSDYVSNIIYAVFFVFFLC 182
           Y  L +   C+RV Y C  V     +++YA   V + C
Sbjct: 233 YACLRVLYACLRVLYACLRVLYACLHVLYACLHVLYAC 270


>SB_10282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -3

Query: 386 LIIQLFYPVNYYYV*DKVRHSIDLALITKILFYITYKLTLYSGFLFLLN 240
           L + +F+ V +  V     H +   LI++ LF+ TYKL ++S  L  LN
Sbjct: 180 LKMDIFFVVTFLIVIVLAIH-VTYVLISRRLFHYTYKLFIWSLLLEFLN 227


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,010,909
Number of Sequences: 59808
Number of extensions: 157867
Number of successful extensions: 254
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)