Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0114
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55) 32 0.39
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0) 32 0.51
SB_47980| Best HMM Match : EGF_CA (HMM E-Value=7.6e-20) 31 1.2
SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5) 30 2.1
SB_47083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_56781| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_14215| Best HMM Match : ZF-HD_dimer (HMM E-Value=1.5) 25 4.2
SB_4609| Best HMM Match : EGF (HMM E-Value=8.9e-07) 29 4.8
SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_34021| Best HMM Match : Zip (HMM E-Value=0) 29 4.8
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_52097| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13) 28 6.3
SB_19355| Best HMM Match : MFS_1 (HMM E-Value=1.8e-22) 28 8.4
SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07) 28 8.4
SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3) 28 8.4
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9) 28 8.4
SB_8396| Best HMM Match : Spb1_C (HMM E-Value=0.65) 28 8.4
>SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55)
Length = 910
Score = 32.3 bits (70), Expect = 0.39
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -2
Query: 384 HGGHQGHVTNVHWARGHNGGV-SHDHRGYTRSLGNNYR 274
+G HQGH+ N +GH G V +++H TRS G Y+
Sbjct: 777 YGAHQGHMCNGLPEKGHYGDVGAYEHAMDTRSPGYPYK 814
>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3255
Score = 31.9 bits (69), Expect = 0.51
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 125 LTPLVHILININDAASATPVESVEPEQSNVEEK-PAVSPVIIADLPS 262
LT H+LIN+ND PV S QS V+E PA + V D S
Sbjct: 597 LTDTSHLLINVNDINDNPPVFSPSAYQSRVKENTPAGTQVSATDRDS 643
>SB_47980| Best HMM Match : EGF_CA (HMM E-Value=7.6e-20)
Length = 591
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Frame = -2
Query: 417 ARGHNGRVS---HDHGGHQ-GHVTNV----HWARGHNGGVSHDHRGYTRSLGNNYRARYY 262
A G G VS H G H GHVT + HW G + G + N + +R Y
Sbjct: 341 ASGRTGPVSLGSHYLGKHHDGHVTLINGIQHWTVAVTGKYRIEAVGASGGYDNQFNSRSY 400
Query: 261 DGRSAMITG 235
R A ITG
Sbjct: 401 RSRGARITG 409
>SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5)
Length = 442
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +2
Query: 71 SKLPSSHPQSTSPLVPGQLTPLVHILININDAASATPVESVEPEQSNVEEKPAVS 235
SK P S + + G L +++++ND +A PVE+V+ +Q++ + K S
Sbjct: 347 SKGPISPDPAIMEEIDGLSNTLDDLILSLNDVDTAEPVENVDIDQADADCKALYS 401
>SB_47083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 211
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -1
Query: 247 NDHGRNSRLFFNI*LFRFDAFNGGSAGSIVDVNKNVDER 131
N+ G L+ I LFR N GS DV K+ DER
Sbjct: 23 NERGNQFSLYQKIDLFRLQCLNEAEEGSGKDVFKSWDER 61
>SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Frame = -2
Query: 417 ARGHNGRVSHDHGG----HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRS 250
+R +G DHGG H G + R +GG DH G R G R GR
Sbjct: 2 SRRDHGSTRRDHGGTGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGRD 61
Query: 249 AMITGETAG 223
TG G
Sbjct: 62 HGGTGRDHG 70
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Frame = -2
Query: 414 RGHNGRVSHDHGGHQ---GHVTNVHWARGHN-GGVSHDHRGYTRSLGNNYRARYYDGRSA 247
R H G DHGG + G H G + GG DH G R G R GR
Sbjct: 11 RDHGG-TGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGRDHGGTGRDH 69
Query: 246 MITGETAG 223
TG G
Sbjct: 70 GGTGRDHG 77
>SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 29.5 bits (63), Expect = 2.7
Identities = 24/76 (31%), Positives = 31/76 (40%)
Frame = -2
Query: 405 NGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRSAMITGETA 226
+G SHD G H + + GH+G SHD G+ Y Y + +TG
Sbjct: 5 DGVDSHDDDGDDSHDDDGDDSHGHDGVESHDGYGF-------YNVYYNGDPKSSVTGHIR 57
Query: 225 GFSSTFDCSGSTLSTG 178
TFD GS S G
Sbjct: 58 P-DGTFD--GSFFSAG 70
>SB_56781| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = -2
Query: 420 WARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTR-SLGNNYRARYYDGRSAM 244
+ RG G G +G R + GG + RGYTR + G R Y +
Sbjct: 55 YTRGTRGFTGGTRGFTRGTRGYTRGTRRYTGGYTRGTRGYTRGTRGYTGGTRGYTRGTRR 114
Query: 243 ITGETAGFS 217
TG T G++
Sbjct: 115 YTGGTRGYT 123
>SB_14215| Best HMM Match : ZF-HD_dimer (HMM E-Value=1.5)
Length = 738
Score = 25.4 bits (53), Expect(2) = 4.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 369 GHVTNVHWARGHNGGVS 319
GHVTN +RGH+G ++
Sbjct: 720 GHVTNTSRSRGHDGYIT 736
Score = 21.8 bits (44), Expect(2) = 4.2
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Frame = -2
Query: 420 WARGHNGRVSHDHGG-HQGHVT 358
W R H R S+ HG + HVT
Sbjct: 671 WIREHKERTSYGHGTVTRRHVT 692
>SB_4609| Best HMM Match : EGF (HMM E-Value=8.9e-07)
Length = 287
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Frame = -2
Query: 417 ARGHNGRVS---HDHGGHQ-GHVTNV----HWARGHNGGVSHDHRGYTRSLGNNYRARYY 262
A G G VS H G H GHVT V HW G + G + N +R Y
Sbjct: 53 ASGRTGPVSLGSHYLGKHHDGHVTLVNGTQHWTVDVTGKYRIEAVGASGGYDNQSNSRSY 112
Query: 261 DGRSAMITG 235
R A ITG
Sbjct: 113 RSRGARITG 121
>SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 417 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 277
A GH ++H H H A H G++H H T+ L ++Y
Sbjct: 214 AHGHTKGLAHSHTKGLAHSHTKGLAHSHTKGLAHSH---TKGLAHSY 257
>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
Length = 808
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Frame = -2
Query: 411 GHNGRVSHDHGGHQ----GHVTNVHWARGHNGGVSHDHRGYT 298
GH+ SH++ GH GH H N G SH H G++
Sbjct: 310 GHSHGHSHENHGHSHENHGHSHENHGHSHENHGHSHKHHGHS 351
>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -2
Query: 405 NGRVSHDHGG--HQGHVTNVHWARGHNGGVSHDHRGYTR 295
+GR++ GG H+++ RG GGVS H G+ R
Sbjct: 1059 HGRLTRGDGGGASSAHISHGRLTRGDGGGVSSAHIGHGR 1097
>SB_52097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +2
Query: 86 SHPQSTSPLVPGQLTPLVHILININDAASATPVESVEPEQSNVEEKPAVSPVIIADLPS 262
+ P TS ++PG TP+V ++ PV V P +N + P P +IA P+
Sbjct: 372 ARPAMTSGVIPGVQTPVV----RFQGPVASGPVTVVRPSSANPQIAP--RPAVIAPGPA 424
>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
Length = 492
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 414 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDH 310
R H+ R H HGG G+ + GH GG H H
Sbjct: 123 RSHSHR--HAHGGGPGYGGDYGGGLGHCGGPGHGH 155
>SB_19355| Best HMM Match : MFS_1 (HMM E-Value=1.8e-22)
Length = 572
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 176 TPVESVEPEQSNVEEKPAVSPVIIADLPS 262
T +E +E Q++V KPA +P+ ++ LP+
Sbjct: 535 TALEPIEEVQADVSAKPADTPMRVSSLPT 563
>SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)
Length = 844
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 158 NDAASATPVESVEPEQSNVEEKPAVSPVIIADLP 259
+D TPVE+ E EQS+++ + P+ D P
Sbjct: 735 DDQDHKTPVETTETEQSDMDTSESYDPIAPTDDP 768
>SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)
Length = 861
Score = 27.9 bits (59), Expect = 8.4
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Frame = -2
Query: 417 ARGHNGRVSHDHGG---HQGHVTNVHWA-RGHNGGVSHDHRGYTRSLGNNYRARYYDGRS 250
+RG+ G + +GG H G T + H GG + + G+TR G+ R+Y G +
Sbjct: 328 SRGNTGGFTRHYGGFTRHYGGFTRHYGVFTRHYGGFTRHYGGFTRHYGD--FTRHYGGFT 385
Query: 249 AMITGETAGFSS-TFDCSGSTLSTGV 175
G T + T G T GV
Sbjct: 386 RHYGGFTRHYGGFTRHYGGFTRHYGV 411
>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1789
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 173 ATPVESVEPEQSNVEEKPAVSP 238
+TPV + EP++ EEKP+ SP
Sbjct: 1480 STPVATPEPKKEEPEEKPSPSP 1501
>SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9)
Length = 125
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 390 HDHGGHQGHVTNVHWARGHNGGVSHDHRGYT 298
HD+GGH H+ GH+ G+ HD+ G+T
Sbjct: 83 HDYGGHD------HYDGGHHDGMHHDY-GHT 106
>SB_8396| Best HMM Match : Spb1_C (HMM E-Value=0.65)
Length = 1007
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +2
Query: 113 VPGQLTPLVHILININDAASATPVESVEPEQSNVEEKPAVS 235
+ G L +++++ND +A PVE+V+ +Q++ + K S
Sbjct: 4 IDGLSNTLDDLILSLNDVDTAEPVENVDIDQADADCKALYS 44
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,110,115
Number of Sequences: 59808
Number of extensions: 282355
Number of successful extensions: 1054
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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