Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0103
(556 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10327| Best HMM Match : Trypsin (HMM E-Value=0) 42 4e-04
SB_11235| Best HMM Match : Trypsin (HMM E-Value=1.1e-08) 36 0.022
SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.039
SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19) 30 1.5
SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0) 29 2.6
SB_21520| Best HMM Match : Trypsin (HMM E-Value=0) 28 4.5
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_19049| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_4442| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_27634| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_19561| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_14704| Best HMM Match : Mak16 (HMM E-Value=9.3) 27 7.8
SB_1442| Best HMM Match : SRCR (HMM E-Value=0) 27 7.8
>SB_10327| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 865
Score = 41.5 bits (93), Expect = 4e-04
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Frame = +3
Query: 201 PSCWTCDRTHEWQNFNL-RASLLTNTRSVTAAHCWRSRDAQARQFTLAFGTANIFSGGTR 377
P W + ++ ++ ASLLT ++TAAHC D A +TL G + G
Sbjct: 249 PHSWPWQLSFRYKGSHICGASLLTPGWALTAAHCLTLSD-DASDYTLVAGAHQRENDGQV 307
Query: 378 VTTSSVHMHGSYNMNNLHNDVAVIN-HNHVGFNNNIQRISLAS 503
S + H ++M ++ NDVA++ +V ++ + I L S
Sbjct: 308 FGISKIRKHKGFSMVHVRNDVALLKLSTYVQLSDKVGTICLPS 350
>SB_11235| Best HMM Match : Trypsin (HMM E-Value=1.1e-08)
Length = 235
Score = 35.9 bits (79), Expect = 0.022
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Frame = +3
Query: 201 PSCWTCDRT-HEWQNFNLRASLLTNTRSVTAAHCWRSRDAQARQFTLAFGT-ANIFSGGT 374
P+ W + + + N ASLL+ ++TAAHC + R + +TLA G +
Sbjct: 94 PNSWPWQLSLRVYGSHNCGASLLSPGWALTAAHCVQ-RSSNPADYTLAAGAHRRVNDAHA 152
Query: 375 RV-TTSSVHMHGSYNMNNLHNDVAVI 449
+V S V H ++M +L NDV ++
Sbjct: 153 QVLRVSQVISHKEFSMGHLRNDVTLL 178
>SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 620
Score = 35.1 bits (77), Expect = 0.039
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = +3
Query: 240 NFNLRASLLTNTRSVTAAHCWRSRDAQARQFTLAFGTANIFSGGTRVTTSSVH---MHGS 410
NF SL+++T VTAAHC +R + Q+ + G N T +V H
Sbjct: 499 NFICGGSLVSSTWVVTAAHC-VARSSNPAQYQIIVGEHNRNVNEVTEETLNVKKVIAHPQ 557
Query: 411 YNMNNLHNDVAVI 449
YN L ND+A+I
Sbjct: 558 YNNPRLSNDIALI 570
>SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19)
Length = 320
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = -2
Query: 330 TDEPGHPWTSSSEQRSQSGCWSVRKPAD*SSAIRECDHKSSKMGVSTSVGGRTTHNPGTV 151
T + WTS+ + Q+ S + A+ R+CD +S S TTH G
Sbjct: 242 TSTADNQWTSTEDVSVQALSGSPTEAAN-----RDCDDSASSTSDKESAPDETTHASGNT 296
Query: 150 EVSGF 136
+++GF
Sbjct: 297 KLTGF 301
>SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)
Length = 1019
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = +3
Query: 258 SLLTNTRSVTAAHCWRSRDAQARQFTLAFGTANIFSGGTR----VTTSSVHMHGSYNMNN 425
SL+ + +TAAHC S+ + + + G + T + S++ H +YN
Sbjct: 420 SLIHSNWVLTAAHCISSK--RPAEVVVRLGAHSRLGSLTTDMQDIKVSAIITHSNYNSRT 477
Query: 426 LHNDVAVI 449
++ND+A++
Sbjct: 478 MYNDIALL 485
>SB_21520| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 800
Score = 28.3 bits (60), Expect = 4.5
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 258 SLLTNTRSVTAAHCWRSRDAQARQFTLAFGTANIFSGGTRVTTSSVHMHGSY-NMNNLHN 434
SLL++T +TAAHC R +T+ G GT S+ + H Y + +
Sbjct: 343 SLLSSTWVLTAAHC-VIRSHNTSDYTVIVGAHKRVLDGTEHKLSAFYKHEKYVGGKDKKH 401
Query: 435 DVAVI 449
D+A+I
Sbjct: 402 DLALI 406
>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1906
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 375 RVTTSSVHMHGSYNMNNLHNDVAVINHNHVGFNNN 479
R +S++ + N N+++N+ + IN+N+ NNN
Sbjct: 1759 RNNNNSINNRNNTNNNSINNNNSSINNNNSSINNN 1793
>SB_19049| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1051
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 351 ANIFSGGTRVTTSSVHMHGSYNMN-NLHNDVAVINHNHVGFNNNIQRISL 497
A I++GGT + + H N N N +N+ N N+ NN I S+
Sbjct: 978 AYIYAGGTATPDTGISEHNDNNNNTNTNNNSDNNNTNNNSDNNTINNYSV 1027
>SB_4442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 354 NIFSGGTRVTTSSVHMHGSYNMNNLHNDVAVINHNHVGFNNN 479
NI S ++ H + + N +N HN+ NHN+ NNN
Sbjct: 171 NINSSNNNNDQNNNHNNNNNNNSNNHNNHKNNNHNNNNSNNN 212
>SB_27634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -2
Query: 216 KSSKMGVSTSVGGRTTHNPGTVEVSGFLGALKTLGPG 106
KSSK S+S TTH P V + T GPG
Sbjct: 61 KSSKSSKSSSTSSSTTHGPTPVPATPSSPPRPTPGPG 97
>SB_19561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 410
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 381 TTSSVHMHGSYNMNNLHND 437
TTS +HMH S+N + L+ D
Sbjct: 170 TTSGLHMHDSHNQSYLYGD 188
>SB_14704| Best HMM Match : Mak16 (HMM E-Value=9.3)
Length = 189
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +3
Query: 303 RSRDAQARQFTLAFGTANIFSGGTRVTTSSVHMHGSYNMNNLHNDVAVINHNHVGFNNNI 482
RS DA+ + N + +++ + N NN +N++ IN+N+ NNNI
Sbjct: 61 RSADAKLTNILIITNNKNNNNNNNNHHHHHNNINNNNNNNNNNNNINNINNNNNNNNNNI 120
>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
Length = 2103
Score = 27.5 bits (58), Expect = 7.8
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Frame = +3
Query: 258 SLLTNTRSVTAAHCWRSRDAQARQFTL-AFGTANIFSG--------GT--RVTTSSVHMH 404
S++ + VTAAHC ++ A ++T+ AF N+ G G+ + + +H
Sbjct: 1812 SIVNSQWIVTAAHCVTTKPPGASRYTMYAFSDLNVTLGEHQLYQLDGSEQNIPIEGIVVH 1871
Query: 405 GSYNMNNLHNDVAVIN-HNHVGFNNNIQRISL 497
SY N+L D+A++ + FN + ++ L
Sbjct: 1872 PSY--NDLDYDIALLKLRQPITFNAYVSQVCL 1901
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,537,770
Number of Sequences: 59808
Number of extensions: 303862
Number of successful extensions: 2941
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2923
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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