Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0090
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38431| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_50645| Best HMM Match : Syndecan (HMM E-Value=0.02)                 30   1.3  
SB_13710| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_53464| Best HMM Match : HET (HMM E-Value=1.9)                       29   3.0  
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_35682| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_33921| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_58171| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024)                  28   6.9  
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)          28   6.9  
SB_15904| Best HMM Match : Collagen (HMM E-Value=4.1e-11)              28   6.9  
SB_1949| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.9  
SB_46550| Best HMM Match : Asn_synthase (HMM E-Value=0)                27   9.1  
SB_31698| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_51988| Best HMM Match : bZIP_2 (HMM E-Value=7.3e-13)                27   9.1  
SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)                   27   9.1  

>SB_38431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1042

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 305 LKGKSSGSERPQDAAENRISPSAEPTD-AETLGTARTKLSRVPT 177
           + G+SSG+  P D   N + PS  PT  ++T+ T+ +K +   T
Sbjct: 767 MAGQSSGTITPTDGTNNGLKPSVPPTTLSQTVSTSISKSATATT 810


>SB_50645| Best HMM Match : Syndecan (HMM E-Value=0.02)
          Length = 226

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 24/115 (20%), Positives = 42/115 (36%)
 Frame = -2

Query: 413 DLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENRISPSAE 234
           D E+  D++     +          GDG        ++G SSGS    +A    I P+ +
Sbjct: 23  DGEIDIDVSTIKPPNKKAKPTPTVSGDGEDGEEGSAIQGDSSGSGSGDEAVPTTIIPTEK 82

Query: 233 PTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVTRPEKLMMSDAPGGLQEP 69
            T  + L  A    +R P    R+       +    +T  E +  ++ P    +P
Sbjct: 83  VTITKELTKAPEVSTRKPKPKDRKTKEPKVETEEVEITTAEPVKPTEKPTEFVKP 137


>SB_13710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = +3

Query: 285 SGGLALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQIN 416
           SGG  L    A+A  +VSL+D+   S   A I++ D++ +LQ++
Sbjct: 665 SGGRTLVQAAADAALAVSLSDH--CSQPSAPISLYDLRDSLQVH 706


>SB_53464| Best HMM Match : HET (HMM E-Value=1.9)
          Length = 251

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -2

Query: 356 NDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENRISPSAEPTDAET 216
           NDV  E  G  +  NDV +G + G        EN++ PS +  D ET
Sbjct: 144 NDVNQENVGPSNQQNDVDQGNAVGLSN----QENKVDPSNQENDVET 186


>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1584

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 392 IANSYCSSDVTDNDV-VCEGDGSGSLSNDVLKGKSSGSERPQDAA 261
           + +S+   + TD D  + +G+GSGS  N +  G  +GS   +++A
Sbjct: 695 LVDSHTPKEFTDTDAKLLQGEGSGSQHNVMRGGSGAGSGNLKESA 739


>SB_35682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 23/74 (31%), Positives = 36/74 (48%)
 Frame = -2

Query: 371 SDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENRISPSAEPTDAETLGTARTKL 192
           +D+TD        G+ +  ++V   +   S  P+DA   +I PS       TL T+ + L
Sbjct: 95  NDLTDEFNTMGAPGTAATLHEVAAPRRGSSHFPKDAPYKKIYPS-----TNTLYTSLSPL 149

Query: 191 SRVPT*LTRRKCRE 150
           SR P  LT  +CR+
Sbjct: 150 SRKP--LT-NECRD 160


>SB_33921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 549

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
 Frame = -2

Query: 404 VRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERP--QDAAENRISPSAEP 231
           VR D      +SDV    V  EG+  G    +        S RP    A  N+++   + 
Sbjct: 170 VRRDYVEGVYASDVPPGAV--EGEEGGETEEEKGPIPVPPSNRPTMSPATTNQLATQGDN 227

Query: 230 TDAETLGTARTKLSRVPT*LTRR--KCRELKS-SALTSVTRP 114
                L    TK++ +PT    R  K  E  + SA TS+ RP
Sbjct: 228 FTTSPLANRPTKMTNIPTDQEERINKTEESSTKSATTSLERP 269


>SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 25/108 (23%), Positives = 39/108 (36%)
 Frame = -2

Query: 473 DRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGK 294
           D+D   +V D  S+   +  ++E   D        D  D+DV   G      +   +KGK
Sbjct: 173 DKDESFKVQDADSDNDDDNNEMEDDEDEEEELADDDDDDDDVFTPGKEKVPRTPHTVKGK 232

Query: 293 SSGSERPQDAAENRISPSAEPTDAETLGTARTKLSRVPT*LTRRKCRE 150
                 PQ +  +  S            T   K SR P+   R + R+
Sbjct: 233 HISFRTPQPSKTSSKSSRTSSRTTPARATPSRKSSRTPSQTPRSQQRK 280


>SB_58171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
 Frame = -2

Query: 410 LEVRFDIANSYCSSDVTDNDVVCEG---DGSGSLSNDVLKGKSSGSERPQDAAENRISPS 240
           +E RFD  +S   SD+   D    G   D   SL   V     +G   P  A++  ++PS
Sbjct: 1   MEERFDAKSSPPDSDMDSIDFCVGGYARDLGNSLRTTVGAVAHNGPSLPSPASKVHMTPS 60

Query: 239 AEPTDAETLGTARTKLSR 186
            E   A      + +LSR
Sbjct: 61  REEVKALAYDRLQEELSR 78


>SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024)
          Length = 286

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 311 DVLKGKSSGSERPQDAAENRISPSAEPTDAETLGTARTKLSRVPT 177
           D  KG ++G+E  ++      +P+  PT A T  T  T     PT
Sbjct: 99  DDSKGGAAGAEEKEEGEGGGDTPTTAPTTAATTPTTPTTAPTTPT 143


>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
          Length = 1039

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -2

Query: 296 KSSGSERPQDAAENRISPSAEPTDAETLGTARTKLSRVPT*LTRRKCRE-LKSSALTSVT 120
           KSS S  P      R   +    +        T+    P+  T R  RE L++S+L SVT
Sbjct: 548 KSSSSATPPPGNNARSKTTESNKNRSVARRNLTQGDSAPSAYTLRVIRENLRTSSL-SVT 606

Query: 119 RPEKLMMSDAP 87
           RPEK   + +P
Sbjct: 607 RPEKSPQTPSP 617


>SB_15904| Best HMM Match : Collagen (HMM E-Value=4.1e-11)
          Length = 376

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
 Frame = -2

Query: 347 VCEGDGSGSLSNDVLKGKSSGSERPQDAAEN------RIS---PSAEPTDAETLGTARTK 195
           V +GDG GS S+    G S    R Q+  +N      RI+   P+ E   A  L   RT+
Sbjct: 50  VGDGDGDGSRSSQATYGVSELQRRVQEMDKNMTELTDRIAFQHPAVEQLWA-ALNATRTE 108

Query: 194 LSRVPT*LTRRKCRELKSSALTSVTRP--EKLMMSDAPGGLQEPA*PSR 54
           L  +   +TR      +SS  ++  RP  E  + +  PG L+    P+R
Sbjct: 109 LKELLQ-VTRPTQATPESSTKSTTIRPEAENNVTTTKPGILENTTSPTR 156


>SB_1949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
 Frame = -2

Query: 389 ANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENRISPSAEPTDAETLG 210
           A+ Y SS  T   +  + DG+ S SN +    SS +  P        S +A PT++   G
Sbjct: 23  ASKYSSSITT---LPSDRDGNRS-SNSIFLKNSSFATPP--------SNNAPPTESNKNG 70

Query: 209 TA-RTKLSRVPT*LTRRKCRELKSSALTSVTRPEKLMMSDAP 87
           T   TK    P+  T +  RE   +   SVT PEK   +  P
Sbjct: 71  TKLTTKGDSSPSAYTLKVIRESLRAGSVSVTPPEKSPQTPLP 112


>SB_46550| Best HMM Match : Asn_synthase (HMM E-Value=0)
          Length = 1663

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 320 LSNDVLKGKSSGSERPQDAAENRISPSAEPTDAETL 213
           +S + ++G++ G E+P D  E+   P   P D E +
Sbjct: 250 MSVEGVRGEAEGEEQPVDDEEDATGPGLVPEDPEAV 285


>SB_31698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -2

Query: 338 GDGSGSLSNDVLKGKSSGSERPQDAAENRISPSAEPTDAETLGTART-KLSRVPT*LTRR 162
           G G+G L   + KGK    E+ Q + E R+ P  E  +   L   R+  LS   + + R 
Sbjct: 382 GGGAGGLLGGLKKGKVQSEEQTQRSME-RLRPERESMEGVPLSGRRSPTLSGRRSPVNRE 440

Query: 161 KCRE 150
           + RE
Sbjct: 441 RTRE 444


>SB_51988| Best HMM Match : bZIP_2 (HMM E-Value=7.3e-13)
          Length = 244

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = -2

Query: 425 SEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSG---SLSNDVLKGKSSGSERPQDAAEN 255
           SE I   +    +++   S V+    V   +G G   + S  V+ G+SSGSE     ++ 
Sbjct: 54  SESIPKSINEFTSSTSRGSPVSPGSQVSSDEGRGGSIASSESVVSGQSSGSENNTGKSKR 113

Query: 254 RISPSAEPTDAETLGTARTK 195
           + +P+A      T  T R+K
Sbjct: 114 KKNPNAGKNPKRT-RTQRSK 132


>SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)
          Length = 1197

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 33/145 (22%), Positives = 56/145 (38%), Gaps = 18/145 (12%)
 Frame = -2

Query: 437  SNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGK----------SS 288
            SN   E    +  F +A +  +S+   N     G+G G+  ++  KGK          + 
Sbjct: 710  SNKPEEAFTWKAAFGVAENKSASEDGANTQNAFGEGWGAFDSENKKGKDRQNDTNIFANF 769

Query: 287  GSERPQDAAENR------ISPSAEPTDAETLG--TARTKLSRVPT*LTRRKCRELKSSAL 132
            GS +P     N       ++ + E +DA+ LG     TK    P  + R+     +  + 
Sbjct: 770  GSLQPDIFQPNNNVHKAPVAANDESSDADKLGLDPDSTKKPTEPIYINRKSLSSPEPESA 829

Query: 131  TSVTRPEKLMMSDAPGGLQEPA*PS 57
              ++RP+ L M         P  PS
Sbjct: 830  VELSRPDSLTMEAPTTKTDRPLSPS 854


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,807,769
Number of Sequences: 59808
Number of extensions: 340202
Number of successful extensions: 1185
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)