Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30109
         (776 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59614| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   6e-09
SB_13307| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   2e-07
SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   4e-07
SB_50002| Best HMM Match : Carn_acyltransf (HMM E-Value=6.5e-05)       44   2e-04
SB_58801| Best HMM Match : BRCA2 (HMM E-Value=9.6)                     33   0.26 
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)                30   1.8  
SB_42197| Best HMM Match : rve (HMM E-Value=0.017)                     29   5.5  
SB_29418| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_44830| Best HMM Match : I-set (HMM E-Value=1.1e-08)                 28   7.3  
SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)          28   7.3  
SB_41099| Best HMM Match : VWA (HMM E-Value=0)                         28   9.7  

>SB_59614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 25/63 (39%), Positives = 41/63 (65%)
 Frame = +2

Query: 8   DGFMCYGPLVPDGYATCYNPRDNDVNFATSAFVENPATSCDKYRQALEQSLQDMHDLLLK 187
           + ++ +GP VPDGY  CYNP+ N + ++ S F  NPAT+   +  A+++SL +M  LL  
Sbjct: 284 ESWVVFGPAVPDGYGICYNPQPNKLMYSVSTFNSNPATNPGHFAAAMQRSLDEM-QLLGT 342

Query: 188 VTK 196
           ++K
Sbjct: 343 ISK 345


>SB_13307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 24/56 (42%), Positives = 36/56 (64%)
 Frame = +2

Query: 29  PLVPDGYATCYNPRDNDVNFATSAFVENPATSCDKYRQALEQSLQDMHDLLLKVTK 196
           P VPDGY  CYNP+ N + ++ S F  NPAT+   +  A+++SL +M  LL  ++K
Sbjct: 116 PAVPDGYGICYNPQPNKLMYSVSTFNSNPATNPGHFATAMQRSLDEM-QLLGTISK 170


>SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1675

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 21/45 (46%), Positives = 31/45 (68%)
 Frame = +2

Query: 35  VPDGYATCYNPRDNDVNFATSAFVENPATSCDKYRQALEQSLQDM 169
           VPDGYA CYNP+ N + ++ S F  NPAT+   +  A+++SL +M
Sbjct: 355 VPDGYAICYNPQPNKLMYSVSTFNSNPATNPGHFATAMQRSLDEM 399


>SB_50002| Best HMM Match : Carn_acyltransf (HMM E-Value=6.5e-05)
          Length = 326

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 23/61 (37%), Positives = 31/61 (50%)
 Frame = +2

Query: 23  YGPLVPDGYATCYNPRDNDVNFATSAFVENPATSCDKYRQALEQSLQDMHDLLLKVTKSK 202
           +GP+V DGY  CYN   + V +  +    NP T    +   L++SL DM    L  T SK
Sbjct: 269 FGPMVTDGYGICYNQLPDRVLYCLTTDDTNPITDAGHFAAVLKKSLNDMQ---LLATTSK 325

Query: 203 L 205
           L
Sbjct: 326 L 326


>SB_58801| Best HMM Match : BRCA2 (HMM E-Value=9.6)
          Length = 69

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +2

Query: 23  YGPLVPDGYATCYN-PRDNDVNFATSAFVENPATSCDKYRQALEQSLQDMHDL 178
           +GP+  DGY   Y  P +N + F  S+ + +  T+ +++ + L  SL ++ +L
Sbjct: 7   FGPVADDGYGVSYMVPDENRIFFHVSSKISSNKTNSERFVKNLYSSLAELKEL 59


>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 24  TGPSCRTATPLAITHETTTSTSQLPHSSKIPLPAVTNT 137
           T P+  T TP A T  TTT+T+  P+++       T T
Sbjct: 108 TAPNATTTTPTATTTTTTTTTTTTPYATTTTPNTTTTT 145


>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
          Length = 796

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 12  GSCATGPSCRT-ATPLAITHETTTST-SQLPHSSKIPLPAVTNTGK 143
           G   T PS    ATP + T +TT  T SQ P + + P P+   TG+
Sbjct: 274 GHLPTTPSTTPQATPPSTTSQTTAPTASQAPSAGETPQPSTATTGE 319


>SB_42197| Best HMM Match : rve (HMM E-Value=0.017)
          Length = 602

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 446 TRSLGKLVKLNKMVGPLDLNMDIGSHDSDSKTIREKCTLLSN 321
           T   G++ K+   +GP DLN  I      +KT+ E  T LS+
Sbjct: 192 TNDKGEITKIRVCLGPRDLNKWIKREPHYTKTVDEVVTQLSD 233


>SB_29418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 30  PSCRT-ATPLAITHETTTSTSQLPHSSKIPLPAVTNTGKLWSSHYRTCMIYFLK*PNLSS 206
           P+  T A P+    + TT     PH+  IP+ ++ +   +++ +  TC I     P++++
Sbjct: 91  PNLHTCAIPIQFIPDMTTIYIPNPHTCAIPIKSIPDMTTIYTPNLHTCAITIKSIPDMTT 150


>SB_44830| Best HMM Match : I-set (HMM E-Value=1.1e-08)
          Length = 480

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 39  RTATPLAITHETTTSTSQLPHSSKIPLPAVTNTGKLWSS 155
           RT+TPL IT+E + + +      +IPL         W++
Sbjct: 417 RTSTPLVITNEMSDAATSTAAEPRIPLSVFIGVLSAWAT 455


>SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)
          Length = 734

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +2

Query: 11  GFMCYGPLVPDGYATCYNPRDNDVNFATSAFVENPATSCDKYRQALEQSLQDMHDLL 181
           G +CYGP + +GY    +     V+    + ++N      K +Q  E+      DLL
Sbjct: 311 GCLCYGPPIEEGYYYDMHLEGRQVSSNDFSSLDNLTKKITKEKQPFERLEMKKEDLL 367


>SB_41099| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3373

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +2

Query: 548 NKVCTTPKLDVERVGAVNLYGL 613
           N+VCT+P++ V R GAV LY L
Sbjct: 555 NRVCTSPRIIVRR-GAVGLYML 575


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,512,616
Number of Sequences: 59808
Number of extensions: 446970
Number of successful extensions: 920
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)