Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30093
(555 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4894| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 1e-11
SB_38980| Best HMM Match : RhoGAP (HMM E-Value=0) 49 2e-06
SB_42552| Best HMM Match : RhoGAP (HMM E-Value=0) 46 3e-05
SB_42550| Best HMM Match : RhoGAP (HMM E-Value=0) 44 6e-05
SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0) 42 4e-04
SB_718| Best HMM Match : RhoGAP (HMM E-Value=0) 40 0.002
SB_31303| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.017
SB_19750| Best HMM Match : RhoGAP (HMM E-Value=8.4e-34) 34 0.090
SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 29 2.6
SB_34659| Best HMM Match : WD40 (HMM E-Value=1.1e-34) 27 7.8
>SB_4894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 486
Score = 66.5 bits (155), Expect = 1e-11
Identities = 33/96 (34%), Positives = 56/96 (58%)
Frame = +1
Query: 241 PIFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLF 420
PIFG+PL+++V++S D LP + R+ I Y++ +GL + IYR K K L++L+
Sbjct: 97 PIFGIPLEKAVKQSILPDGVELPRLFREGIMYVEENGLNVEGIYRVSGVKSKVDALKELY 156
Query: 421 TDRGPTFPYHWDVPVACAMLKAFISELPESILTQEL 528
++ V +++K ++ ELPES+LT L
Sbjct: 157 DQGKQVDLKEYEPEVVASIVKQYLRELPESVLTMML 192
>SB_38980| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 367
Score = 49.2 bits (112), Expect = 2e-06
Identities = 32/94 (34%), Positives = 47/94 (50%)
Frame = +1
Query: 247 FGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFTD 426
FGVPL++ V +SR D + +P V+ + YL GLK + I+R + + L+ F
Sbjct: 176 FGVPLEE-VTKSR--DGSPIPWVLAKIVHYLSQCGLKHEGIFRVSGNHKVVESLKATFDR 232
Query: 427 RGPTFPYHWDVPVACAMLKAFISELPESILTQEL 528
G DV +LK F+ ELPE + Q L
Sbjct: 233 DGDADLEECDVMAVAGLLKLFLRELPEPPVPQAL 266
>SB_42552| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 945
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Frame = +1
Query: 304 LPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFTDRGPTFPYHWDVP-VACAML 480
+P +V +I++L+ +GL I+RT K + +Q+R+ F T D P A+
Sbjct: 406 VPTIVNQAIEHLENYGLHVLGIFRTGGSKKRMKQMREQFDSGEKTQFNAEDNPHDVAALF 465
Query: 481 KAFISELPESILTQELH 531
K ++ +LPE +LT+EL+
Sbjct: 466 KEYLRDLPEPLLTRELY 482
>SB_42550| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 790
Score = 44.4 bits (100), Expect = 6e-05
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Frame = +1
Query: 244 IFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFT 423
+FGVP+ ++RS LP + +I+YLQ ++S I+R K + L+ +
Sbjct: 300 VFGVPMSVVLQRS----GQPLPRPILCAINYLQRTCVESVGIFRKSGGKQRINNLKDMME 355
Query: 424 DRGPTFPYHWDVPVACA-MLKAFISELPESILTQELHRSVRTSH 552
D + P A MLK + +LP+ ILT +L + T H
Sbjct: 356 DNPEHTDFEGMSPYDLADMLKQYFRDLPDPILTSKLAETFITIH 399
>SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 1277
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Frame = +1
Query: 292 DDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFTDRGPTFPYHW----DV 459
+ + +PL+VR + ++ GL+S +YR + + ++LR F + D+
Sbjct: 940 EQSSVPLLVRKCVLEIEKRGLESVGLYRISGNARRKKELRGFFDENSEAVDISEENCPDI 999
Query: 460 PVACAMLKAFISELPESILTQELHRSVR 543
V +LK ++ ELPE ++T+++ +R
Sbjct: 1000 NVITGILKDYLRELPEPLITEKMTEGLR 1027
>SB_718| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 598
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Frame = +1
Query: 244 IFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFT 423
+FGV ++ R C +PL+V + ++ GL+ IYR ++L++ F
Sbjct: 328 VFGVDIETVTSRESCD----IPLIVIGCVREIEKRGLEEVGIYRLSGASSDVKRLKEGFD 383
Query: 424 DRGPT---FPYHWDVPVACAMLKAFISELPESILTQELH 531
+ + D+ + K ++ +LPE + T EL+
Sbjct: 384 ENSQSALVLVSEADIHAVAGLFKMYLRDLPEPLFTDELY 422
>SB_31303| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 36.3 bits (80), Expect = 0.017
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Frame = +1
Query: 244 IFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFT 423
+FG L ++V+ +P+VV I+Y++ +GL+ + ++R P K K
Sbjct: 97 MFGGDLCETVKFEARKGGGFVPIVVDVCIEYIKKYGLEEEGLFRL-PGNAKHISTLKAQF 155
Query: 424 DRG--PTFPYHWDVPVACAMLKAFISELPESIL 516
+RG P D+ ++LK ++ EL E ++
Sbjct: 156 NRGESPELSDEKDIHTVASLLKLYLRELSEPVI 188
>SB_19750| Best HMM Match : RhoGAP (HMM E-Value=8.4e-34)
Length = 128
Score = 33.9 bits (74), Expect = 0.090
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +1
Query: 304 LPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFTDRGPT---FPYHWDVPVACA 474
+PL+V + ++ GL+ IYR ++L++ F + + D+
Sbjct: 7 IPLIVIGCVREIEKRGLEEVGIYRLSGASSDVKRLKEGFDENSQSALVLVSEADIHAVAG 66
Query: 475 MLKAFISELPESILTQELH 531
+ K ++ +LPE + T EL+
Sbjct: 67 LFKMYLRDLPEPLFTDELY 85
>SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = +1
Query: 367 IYRTEPDKIKFQQLRKLFTDRGPTFPY---HWDVPVACAMLKAFISELPESILTQELHRS 537
++R +K + ++L++L DRG T + ++LK F+ ELPE +LTQ +R+
Sbjct: 77 LFRISGNKKRQEELKELI-DRGDTPKLGCGKFTAHDVASVLKQFLGELPEPLLTQAPYRA 135
>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 29.9 bits (64), Expect = 1.5
Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 4/106 (3%)
Frame = +1
Query: 220 FTLGVALPIFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKF 399
F L P+FG L S P+ V I+ ++ G+ IY
Sbjct: 205 FQLAAQAPVFGQELATQFRPS----SKPAPVCVMKCIEAIEQRGMNVDSIYLISSQGSNK 260
Query: 400 QQLRKLFTDRGPTFPYH---WDVPVACA-MLKAFISELPESILTQE 525
LR F W+ P A +LK + ELP S+ T+E
Sbjct: 261 YSLRLAFCQDPANVNMRDEEWNDPHCIATVLKMYFQELPTSLFTEE 306
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +3
Query: 321 RQHRLLTGTRIKI*RYIPDRTG*DKVSTTEEAVHGSRAYI 440
R R+LTG+R+ I R PD DK+S T+ +H RA I
Sbjct: 1386 RDGRMLTGSRVAIGRQEPDCESHDKMS-TKCHLHVQRALI 1424
>SB_34659| Best HMM Match : WD40 (HMM E-Value=1.1e-34)
Length = 292
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 227 WELRSLYSVY--HCNSLWSALVAMTTPVCRWSSETASIT 337
W +++ SV C LWSA + T +C SS+ S+T
Sbjct: 29 WSAQNILSVGLGTCVYLWSACTSQVTKLCDLSSDGDSVT 67
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,140,121
Number of Sequences: 59808
Number of extensions: 282930
Number of successful extensions: 780
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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