Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30091
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)          88   5e-18
SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_13381| Best HMM Match : Asparaginase (HMM E-Value=6e-09)            30   1.9  
SB_42557| Best HMM Match : GAD (HMM E-Value=1.4)                       30   1.9  
SB_52414| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_20030| Best HMM Match : NTR (HMM E-Value=0.6)                       29   4.4  
SB_13198| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_41930| Best HMM Match : Pkinase_Tyr (HMM E-Value=9.4e-10)           28   7.7  

>SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)
          Length = 246

 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 2/113 (1%)
 Frame = +3

Query: 159 MAPIKVGDQLPAA--DLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQ 332
           M P + G ++P     + E +   KV+   L AGK VVLFA+PGAFTP CS THLP Y +
Sbjct: 1   MLPNREGQKVPKVVFPVREGNDWVKVSTDTLFAGKTVVLFALPGAFTPTCSSTHLPRYNE 60

Query: 333 NADKLKSDGVAEIVCVSVNDPYVMAAWGAHHNTKGKVRMLADPSGNFIKALDL 491
            A   K+ GV +I+C+SVND +VM +W A    +  +  + D +G F + + +
Sbjct: 61  LAPVFKAQGVDDIICLSVNDTFVMNSWAADQKAE-NITFIPDGNGEFSEGMGM 112


>SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 16/32 (50%), Positives = 24/32 (75%)
 Frame = +3

Query: 345 LKSDGVAEIVCVSVNDPYVMAAWGAHHNTKGK 440
           +KS GV  + C++VNDP+VM+AWG  +  +GK
Sbjct: 53  IKSKGVDVVACIAVNDPFVMSAWGEANGCQGK 84



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 16/28 (57%), Positives = 23/28 (82%)
 Frame = +1

Query: 541 MVIVDSKVQDLNVEPDGTGLSCSLADXI 624
           M++ D  V+ L+VEPDGTGL+CSL++ I
Sbjct: 106 MLVEDGVVKQLHVEPDGTGLTCSLSNSI 133


>SB_13381| Best HMM Match : Asparaginase (HMM E-Value=6e-09)
          Length = 231

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +3

Query: 69  MFLTGSSIIRGITAFTNRASARALHISQLSMAPIKVGDQLPAADLFEDSPANKVNICELT 248
           M   G  ++ G    +  ASA +     LS   I  G QLP  DL  D+  N +   ++ 
Sbjct: 18  MRFDGFVVLHGSDTMSYSASALSFMFENLSKPIIFTGSQLPIGDLRTDAKENLITAIQIA 77

Query: 249 A 251
           +
Sbjct: 78  S 78


>SB_42557| Best HMM Match : GAD (HMM E-Value=1.4)
          Length = 366

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 285 AFTPGCSKTHLPGYVQNADKLKSDGVAE-IVCVSVN 389
           A  PG S+  L  + + A  +KSD +A+ IVCV +N
Sbjct: 84  ASIPGFSQEQLQAWARRAKAVKSDSLADAIVCVQLN 119


>SB_52414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 446

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 592 CHRAPHSDLG-PCCQR*PSRTFWSGNLRSGGRLVPRSRA 479
           C+   H   G PCC R    T  + N+  GGRLVPR  A
Sbjct: 232 CNGTIHKKPGLPCCARQTYNT--AENICCGGRLVPRESA 268


>SB_20030| Best HMM Match : NTR (HMM E-Value=0.6)
          Length = 178

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 351 ISVYLRSVRIPASVF*NIPG*RRPAPQII 265
           +SVY  S  +P +VF  +PG R P P ++
Sbjct: 24  LSVYKASELLPRTVFIRVPGGRCPCPHLL 52


>SB_13198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 721

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -1

Query: 428 VVMSSPSRHHIRVINRHAHYFSNSIRFQFICVLYVSRQV 312
           VV   P   HI  +  H H+     R QF  +LYV   +
Sbjct: 621 VVQLEPKFDHITPVLTHLHWLPVEFRIQFKILLYVHHSI 659


>SB_41930| Best HMM Match : Pkinase_Tyr (HMM E-Value=9.4e-10)
          Length = 597

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 394 GSLTDTHTISATPSDFSLSAFCTYPGKCVLEHPGVKAPGTAN 269
           GSL +  TI+++  +F+++A   +PG   +    V  P T N
Sbjct: 199 GSLVEIATINSSSLEFNVNASLRWPGGAAMTPRDVSQPVTKN 240


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,223,901
Number of Sequences: 59808
Number of extensions: 466034
Number of successful extensions: 1014
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)