Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30035
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09)                 29   2.5  
SB_21734| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)                 29   4.3  
SB_38076| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)                 28   5.7  
SB_16998| Best HMM Match : Filamin (HMM E-Value=0.0037)                27   9.9  
SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)                27   9.9  

>SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09)
          Length = 765

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 153 VRTSEIEYPEPGQQNFAYISAIYVKDHYTDGNGGYPIVK-SGGVGQKFVKLKLKSQRG 323
           +R+S  E P PGQ   + +S+  VKD     N G  +   SG + Q  +   LKS +G
Sbjct: 499 LRSSSTETPHPGQSKPSLLSSQLVKDPPQSANTGKIMQSLSGFIVQASLHACLKSVKG 556


>SB_21734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 32  NRVFAVGLQRPKP-RPKSRPADLPRHRLVQDQRIQIRL 142
           N   A+G +R  P +PK+R  + P ++   ++R +IRL
Sbjct: 11  NTASAIGFERLHPHKPKTRVKEYPTYKTATEKRTRIRL 48


>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
          Length = 1604

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/38 (44%), Positives = 18/38 (47%)
 Frame = +2

Query: 53  LQRPKPRPKSRPADLPRHRLVQDQRIQIRLPVHCPNER 166
           L+RP P     P DLP  R V       RLP H P ER
Sbjct: 352 LERPVPAVTRLPTDLPLERPVP---AVTRLPTHLPLER 386


>SB_38076| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)
          Length = 577

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 564 INTFNIFIPYLLSCVIILKIILY 632
           +N FNIF+ YL++C + +  + Y
Sbjct: 152 VNVFNIFVKYLIACTLPVICLCY 174


>SB_16998| Best HMM Match : Filamin (HMM E-Value=0.0037)
          Length = 284

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 260 RISAVAVCVVILHVYRGY 207
           R+SAV V +VILHV+  Y
Sbjct: 16  RVSAVLVLIVILHVFASY 33


>SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)
          Length = 1420

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -1

Query: 421  VKQKSTIKRPLLGVRQQINQYF--P*MVTVKLKPCPL*LFSFNLTNFCPTPPDLTIG 257
            VKQK T  R   G   QI ++F  P +++  ++PC + LF+  L       P +++G
Sbjct: 997  VKQKKTEHREQDGFIYQIMKHFYAPALLSDFVRPCVIVLFTGMLFTSIALTPHISVG 1053


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,447,660
Number of Sequences: 59808
Number of extensions: 314787
Number of successful extensions: 860
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)