Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30030
         (349 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14318| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.8  
SB_18198| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.8  
SB_9705| Best HMM Match : Cadherin (HMM E-Value=0.013)                 27   3.2  
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)                 27   4.2  
SB_51557| Best HMM Match : Collagen (HMM E-Value=0.56)                 26   7.3  
SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)              26   9.7  

>SB_14318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 96  NHQ*QGYQYNNEILKEVHNGFYF 28
           NHQ QGY YN +   + H G Y+
Sbjct: 116 NHQQQGYDYNQQNQYDQHAGNYY 138


>SB_18198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 223

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 222 THVAIDFMGCSRCGENFKA 166
           TH  +DF  C RC E ++A
Sbjct: 198 THACLDFFFCRRCNEEYRA 216


>SB_9705| Best HMM Match : Cadherin (HMM E-Value=0.013)
          Length = 130

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -2

Query: 138 QTFDRNFRISLSTANHQ*QGYQYNNEILKE 49
           ++F+RNF I+++  N + +G   +N+ +KE
Sbjct: 30  KSFERNFNITVNNVNDKPRGLLLSNQYVKE 59


>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
          Length = 1399

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 97  CSGQADPKIPVKSLKKGGKVIAKGFKV 177
           C G  DP+  +   +KG K   K FKV
Sbjct: 658 CKGVGDPRPTITWYRKGSKTFPKHFKV 684


>SB_51557| Best HMM Match : Collagen (HMM E-Value=0.56)
          Length = 697

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 55  KYFIVVLVALSLMICSGQADPKIPVKSLKKG 147
           +Y IVVL+ L L++C G A     +KS KKG
Sbjct: 6   RYSIVVLIVLDLLLCIGTAQ---QIKS-KKG 32


>SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)
          Length = 1019

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 40  IMYFLKYFI-VVLVALSLMICSGQADPKIPV 129
           + YF KY + V++V  +L  C+G  D  +P+
Sbjct: 90  LFYFYKYLVYVIIVLFALASCNGLFDCLMPL 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,102,339
Number of Sequences: 59808
Number of extensions: 156108
Number of successful extensions: 396
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)