Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30005
         (488 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)             119   1e-27
SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.13 
SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_19511| Best HMM Match : Glycos_transf_1 (HMM E-Value=6.2e-23)       29   2.7  
SB_14352| Best HMM Match : NHL (HMM E-Value=2.8026e-45)                28   4.7  
SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1)                  27   6.3  

>SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score =  119 bits (287), Expect = 1e-27
 Identities = 51/68 (75%), Positives = 60/68 (88%)
 Frame = +1

Query: 52  IRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSN 231
           + PV RP I+KKR K+FIRHQSDRY ++  +WRKP+GIDNRVRRRFKGQYLMPNIGYGSN
Sbjct: 2   VMPVNRPRILKKRQKKFIRHQSDRYMRVGESWRKPKGIDNRVRRRFKGQYLMPNIGYGSN 61

Query: 232 KKTRHMLP 255
           KKTR ++P
Sbjct: 62  KKTRFLMP 69



 Score =  106 bits (254), Expect = 1e-23
 Identities = 50/65 (76%), Positives = 58/65 (89%)
 Frame = +3

Query: 252 PNGFRKVLVHNVKELEILMMXNRXYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 431
           P+GF+K +VHNVKELE+LMM NR Y AEIAH VSS+KRK IVERAQQLSI+VTN+ ARLR
Sbjct: 69  PDGFKKFVVHNVKELEVLMMMNRSYAAEIAHNVSSRKRKAIVERAQQLSIKVTNSNARLR 128

Query: 432 SQENE 446
           S+ENE
Sbjct: 129 SEENE 133


>SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 622

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
 Frame = -3

Query: 267 YGIHWEHMTGLLVGTVTNV--GHQV--LTLEPPADSVVNTSRFTPIPLKFVIAIRLMPDK 100
           YG H   M G  + T+T++   H+V  L +EP A  ++ T++FTP  + F+ A  +    
Sbjct: 491 YGTHEGAMYGTKLDTITDIIENHKVAILDVEPQALKILRTAKFTPY-VVFISAPSIKGIN 549

Query: 99  SLRP 88
            +RP
Sbjct: 550 DIRP 553


>SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +2

Query: 95  RDLSGINRIAMTNLRGIGVNLEVLTTESAGGS 190
           +DL  I   A T+LR +G+N+E+L+   AGGS
Sbjct: 169 KDLMAIVFFA-TDLREVGINIELLSMLPAGGS 199


>SB_19511| Best HMM Match : Glycos_transf_1 (HMM E-Value=6.2e-23)
          Length = 496

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 23/73 (31%), Positives = 35/73 (47%)
 Frame = -1

Query: 467 LIIQLYLFILLGAEASGRIRHSDAELLGSFHDQLPLLRRDTMSDLCAVLPVXHHQDFQLF 288
           L ++ +   L G   S R ++    L+GS  +Q    R D + +L   L +  H DF L 
Sbjct: 319 LQLKAFAEFLKGQPKSSRSQYK-LVLIGSCRNQDDADRVDNLRELAKSLSIRKHVDFAL- 376

Query: 287 NIVN*DLTESIGS 249
           N+   +L E IGS
Sbjct: 377 NVSFDELREFIGS 389


>SB_14352| Best HMM Match : NHL (HMM E-Value=2.8026e-45)
          Length = 784

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 431 AEASGRIRHSDAELLGSFHDQLPLLRRDTMSDLCAVLPVXHHQD 300
           AEA+   R   +ELL S  ++LP +RR  +        +  H D
Sbjct: 247 AEATNDFRQELSELLASARERLPFMRRSLLEIEATAQEIPTHVD 290


>SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = +1

Query: 37  TYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNI 216
           +YK++ +P  +P  +     + +   SD+ DK+K    K +    RV    KG+     +
Sbjct: 14  SYKISAKPKSKPAPLDISAAQAMTSNSDKNDKMKVTTPKSKLGHRRVDE--KGETTYKKV 71

Query: 217 GYGSNKKTRHMLPMD 261
           G  S K  R +L  D
Sbjct: 72  GRLSAKPERDVLMQD 86


>SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1)
          Length = 550

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 174 SPQAVQGSILDAQHWLRFQQE 236
           SP+A+QG ++ AQ W   +QE
Sbjct: 151 SPEAIQGFLVSAQEWAIHRQE 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,056,323
Number of Sequences: 59808
Number of extensions: 272806
Number of successful extensions: 970
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)